| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,758,947 – 10,759,038 |
| Length | 91 |
| Max. P | 0.957774 |
| Location | 10,758,947 – 10,759,038 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 94.87 |
| Mean single sequence MFE | -17.90 |
| Consensus MFE | -15.73 |
| Energy contribution | -16.73 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.88 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.794425 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10758947 91 + 22224390 CAAUUAAUCAAAGUAAAUAAAAAACACCUUUCGGUAUAUCCGAUAUGCCCAUCAAUGGCUAACGACUGCCACUUUGGCCAUAUAAUAAUAC ..............................((((.....))))((((.(((....((((........))))...))).))))......... ( -16.00) >DroSec_CAF1 8701 91 + 1 CAAUUAAUCAAAGUAAGUAAAAGGCACCUUUCGGUAUAACCUAUAUGCCCAUCAAUGGCUAACGAUUGCCACUUUGGCCAUAUAAUAAUGC ......................(((.......((((((.....))))))...(((((((........))))..))))))............ ( -16.50) >DroSim_CAF1 6005 91 + 1 CAAUUAAUCAAAGUAAGUAAAAGGCACCUUUCGGUAUAACCGAUAUGCCCAUCAAUGGCUAACGAUUGCCACUUUGGCCAUAUAAUAAUGC .......(((((((........((((....((((.....))))..)))).......(((........)))))))))).............. ( -21.20) >consensus CAAUUAAUCAAAGUAAGUAAAAGGCACCUUUCGGUAUAACCGAUAUGCCCAUCAAUGGCUAACGAUUGCCACUUUGGCCAUAUAAUAAUGC .......(((((((........((((....((((.....))))..)))).......(((........)))))))))).............. (-15.73 = -16.73 + 1.00)
| Location | 10,758,947 – 10,759,038 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 94.87 |
| Mean single sequence MFE | -26.13 |
| Consensus MFE | -23.73 |
| Energy contribution | -23.73 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.84 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.48 |
| SVM RNA-class probability | 0.957774 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10758947 91 - 22224390 GUAUUAUUAUAUGGCCAAAGUGGCAGUCGUUAGCCAUUGAUGGGCAUAUCGGAUAUACCGAAAGGUGUUUUUUAUUUACUUUGAUUAAUUG (((((...(((((.(((.((((((........))))))..))).)))))..)))))(((....)))......................... ( -25.50) >DroSec_CAF1 8701 91 - 1 GCAUUAUUAUAUGGCCAAAGUGGCAAUCGUUAGCCAUUGAUGGGCAUAUAGGUUAUACCGAAAGGUGCCUUUUACUUACUUUGAUUAAUUG .......((((((.(((.((((((........))))))..))).))))))(((...(((....))))))...................... ( -27.20) >DroSim_CAF1 6005 91 - 1 GCAUUAUUAUAUGGCCAAAGUGGCAAUCGUUAGCCAUUGAUGGGCAUAUCGGUUAUACCGAAAGGUGCCUUUUACUUACUUUGAUUAAUUG (((((....((((.(((.((((((........))))))..))).))))((((.....))))..)))))....................... ( -25.70) >consensus GCAUUAUUAUAUGGCCAAAGUGGCAAUCGUUAGCCAUUGAUGGGCAUAUCGGUUAUACCGAAAGGUGCCUUUUACUUACUUUGAUUAAUUG ........(((((.(((.((((((........))))))..))).)))))......((((....))))........................ (-23.73 = -23.73 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:26 2006