| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,758,547 – 10,758,640 |
| Length | 93 |
| Max. P | 0.585189 |
| Location | 10,758,547 – 10,758,640 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 90.25 |
| Mean single sequence MFE | -33.33 |
| Consensus MFE | -24.62 |
| Energy contribution | -26.38 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.585189 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10758547 93 - 22224390 GCAGCGAACCAGCGGCGGCGUAGCAGGAAGCAUUAAAAAUGGCGUCCAAUUUAAAGGACCCCGAGGCCGUUGGUCGCAGGACGAG--AAGCUGCU (((((...((((((((..((..((.....)).........((.((((........))))))))..))))))))(((.....))).--..))))). ( -36.50) >DroSec_CAF1 8302 93 - 1 GCAGCGAACCAGCAGCGGCGUAGCAGGAAGCAUUAAAAAUGGCGUCCAAUUUAAAGGACCCCGAGGCCGUUGGUCGCAGGACGAG--GAGCUGUU (((((...((..(((((((...((.....))........(((.((((........)))).)))..)))))))(((....)))..)--).))))). ( -33.70) >DroSim_CAF1 5621 93 - 1 GCAGCGAACCAGCAGCGGCGUAGCAGGAAGCAUUAAAAAUGGCGUCCAAUUUAAGGGACCCCGAGGCCGUUGGUCGCAGGACGAG--GAGCUGUU (((((...((..(((((((...((.....))........(((.((((........)))).)))..)))))))(((....)))..)--).))))). ( -33.60) >DroEre_CAF1 7092 88 - 1 GCAGCGAACUG---GCGGCGUAGCAGGGAGCAUUAAAAAUGGCGUCCAAUUUAAAGGACCCCGAGGCGGGUGCUCGCAGGACGAGCCGAGC---- ...((....((---((..(((....(.(((((((.....(((.((((........)))).))).....))))))).)...))).)))).))---- ( -29.50) >consensus GCAGCGAACCAGCAGCGGCGUAGCAGGAAGCAUUAAAAAUGGCGUCCAAUUUAAAGGACCCCGAGGCCGUUGGUCGCAGGACGAG__GAGCUGUU (((((.......(((((((...((.....))........(((.((((........)))).)))..)))))))(((....))).......))))). (-24.62 = -26.38 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:24 2006