Locus 4061

Sequence ID X_DroMel_CAF1
Location 10,757,820 – 10,757,923
Length 103
Max. P 0.884596
window6674

overview

Window 4

Location 10,757,820 – 10,757,923
Length 103
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 81.46
Mean single sequence MFE -48.18
Consensus MFE -34.07
Energy contribution -33.52
Covariance contribution -0.55
Combinations/Pair 1.45
Mean z-score -2.40
Structure conservation index 0.71
SVM decision value 0.93
SVM RNA-class probability 0.884596
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10757820 103 + 22224390
GCGCCCUCAGCGGUCACAUCUUUGGGGCGCAGCACCUGCAGCAGCUGCAGGUCAUCCAGCGGCUGCAGCAGCAGCGUGCCGCAAUGCUGGCCGCCCGCAACAC-----
(((......((((((((((...((.(((((.((..((((.((((((((.((....)).)))))))).))))..))))))).))))).))))))).))).....----- ( -52.60)
>DroVir_CAF1 6414 108 + 1
GCGCGCUCAGCGGCCACAUCUUUGGGGCGCAGCAUCUGCAACAGUUGCAGGUUAUCCAGCGUCUGCAGCAGCAGCGUGCUGCGAUGUUGGCGGCGCGCAACAGCGGCA
(((((((..(((.((.((....)))).))).(((((((((.....)))))))....(((((((.((((((......)))))))))))))))))))))).......... ( -52.40)
>DroPse_CAF1 22665 103 + 1
GCGCGCUGAGUGGCCACAUCUUCGGGGCUCAGCACCUGCAACAGCUGCAGGUGAUCCAGCGCCUCCAGCAGCAGCGCGCCGCGAUGCUGGCCGCCCGCAACAG-----
....((.(.(((((((((((...((.(((...((((((((.....))))))))....))).))....((.((.....)).)))))).)))))))).)).....----- ( -47.50)
>DroWil_CAF1 3524 103 + 1
GUGCAUUGAGUGGACAUAUUUUUGGGGCACAGCAUUUGCAGCAGUUGCAGGUGAUUCAACGUUUGCAACAGCAACGUGCGGCCAUGUUGGCCGCUCGUAAUAG-----
((((...(((((....))))).....)))).((....)).((.((((((..((......))..)))))).)).(((.((((((.....)))))).))).....----- ( -38.80)
>DroMoj_CAF1 5737 102 + 1
GUGCGCUCAGUGGUCACAUCUUUGGGGCGCAGCAUCUGCAACAGUUGCAGGUGAUACAGCGUCUGCAGCAGCAGCGUGCCGCAAUGUUGGCGGCGCGCAACG------
.(((((((...((......))...)))))))((....))....(((((((..(......)..)))))))....(((((((((.......)))))))))....------ ( -46.80)
>DroAna_CAF1 5523 103 + 1
GCGCCCUGAGCGGCCACAUCUUCGGGGCCCAGCACCUGCAGCAGCUGCAGGUCAUCCAGCGAUUGCAGCAACAGCGGGCCGCCAUGCUGGCCGCUCGCAACGG-----
.((...(((((((((((((....(((((((.((((((((((...))))))))......((.......))....))))))).))))).))))))))))...)).----- ( -51.00)
>consensus
GCGCGCUCAGCGGCCACAUCUUUGGGGCGCAGCACCUGCAACAGCUGCAGGUGAUCCAGCGUCUGCAGCAGCAGCGUGCCGCAAUGCUGGCCGCCCGCAACAG_____
(((......((((((((((...((.(((((.((....))....(((((((((........)))))))))......))))).))))).))))))).))).......... (-34.07 = -33.52 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:23 2006