Locus 4052

Sequence ID X_DroMel_CAF1
Location 10,737,413 – 10,737,506
Length 93
Max. P 0.657019
window6658

overview

Window 8

Location 10,737,413 – 10,737,506
Length 93
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 88.48
Mean single sequence MFE -22.95
Consensus MFE -17.44
Energy contribution -17.95
Covariance contribution 0.50
Combinations/Pair 1.13
Mean z-score -1.63
Structure conservation index 0.76
SVM decision value 0.26
SVM RNA-class probability 0.657019
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10737413 93 - 22224390
AAA--AAAGGUCGCUGGUCAAGCUGAUCAGCAAAAACAGAGCACACAGUGGGCCGUGAGAAGUGAUCCUCACAUCCGAAGCACACAAUAGCAAUA
...--...(((((((((((.....)))))))..........(((...)))))))(((((........))))).......((........)).... ( -25.40)
>DroSec_CAF1 13242 92 - 1
AAA--AAAGGUCGCUGGCCAAGCUGAUCCGCAAAAACAGAGCACACAGUGGGUCGUGAUAAGUAAUGCUCGCAUCCGAACCGCACAAUA-CGAUA
...--...(((.....)))..((.(((((((................)))))))((((..(....)..)))).........))......-..... ( -17.59)
>DroEre_CAF1 13446 93 - 1
AAA--AAAGGUCGCUGGCCAAGCUGAUCAGCGAAAACAGAGCACACAGUGGGUCGGGAAAAGUGAUGCUCGCAUCCAAACUACCCAAUAGCGAUA
...--....((((((((((..((((....((.........))...)))).))))(((...(((((((....))))...))).)))...)))))). ( -26.00)
>DroYak_CAF1 13513 95 - 1
AAAAAAAAGGUCGCUGGCCAAGCUGAUCAACAAAAACUGAGCACACAGUGGGUCGUGAUAAGUGAUGCUCGCAUCCAAACGACACAAUAGCGAUA
.........(((((((.((..((((.(((........))).....))))))(((((.....(.((((....)))))..)))))....))))))). ( -22.80)
>consensus
AAA__AAAGGUCGCUGGCCAAGCUGAUCAGCAAAAACAGAGCACACAGUGGGUCGUGAUAAGUGAUGCUCGCAUCCAAACCACACAAUAGCGAUA
.........((((((((((..((((....((.........))...)))).))))(((......((((....)))).......)))...)))))). (-17.44 = -17.95 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:09 2006