| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,736,564 – 10,736,656 |
| Length | 92 |
| Max. P | 0.506648 |
| Location | 10,736,564 – 10,736,656 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 92.55 |
| Mean single sequence MFE | -24.93 |
| Consensus MFE | -19.00 |
| Energy contribution | -19.25 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.76 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506648 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10736564 92 + 22224390 CUCUAAUCCAGUGCUCACUCACAUUGAGCUCUUCGCUCAU-AAAACAAGAACAA---GACUGUUGGGAAUCACUCAAAGAGGUGUGUGAGUGGCUU ............((.((((((((((((((.....))))).-.............---.(((.(((((.....)))))...)))))))))))))).. ( -27.10) >DroSec_CAF1 12348 96 + 1 CUCUAAUCCAGUGCUCACUCACUUUGAGCUCUUCGCUCCUGAAAACAAGAACAAGAAGACAGUUCGGAAUCACUCAAAGAGGUGUGUGAGUGGCUU ............((.(((((((((((((((((((..((.((....)).))....)))))..)))))))..((((......)))).))))))))).. ( -25.60) >DroEre_CAF1 12705 92 + 1 CUCUAAUCCAGUGCUCACUCACUUUGAGCUCUUCGCUCCC-AAAACAAGAAGAA---GACAGUUCGGAAUCACUCAAAGAGGUGUGUGAGUGUCUU ..........(..(((((.(((((((((((((((..((..-.......)).)))---))..)))))))....(((...)))))).)))))..)... ( -23.20) >DroYak_CAF1 12656 92 + 1 CUCUAAUCCAGUGCUCACUCACUUUGAGCUCUUCGCUCCC-AAAACAAGAAGAA---GAUAGUUCGGAAUCACUCAAAGAGGUGUGUGAGUGUAUU ..........(..(((((.(((((((((((((((..((..-.......)).)))---))..)))))))....(((...)))))).)))))..)... ( -23.80) >consensus CUCUAAUCCAGUGCUCACUCACUUUGAGCUCUUCGCUCCC_AAAACAAGAACAA___GACAGUUCGGAAUCACUCAAAGAGGUGUGUGAGUGGCUU ............((((((.((((((((((.....))))............................((.....))...)))))).))))))..... (-19.00 = -19.25 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:08 2006