Locus 405

Sequence ID X_DroMel_CAF1
Location 1,181,014 – 1,181,104
Length 90
Max. P 0.940136
window624

overview

Window 4

Location 1,181,014 – 1,181,104
Length 90
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 80.14
Mean single sequence MFE -28.65
Consensus MFE -17.74
Energy contribution -18.05
Covariance contribution 0.31
Combinations/Pair 1.22
Mean z-score -2.67
Structure conservation index 0.62
SVM decision value 1.28
SVM RNA-class probability 0.940136
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1181014 90 - 22224390
---------UCUGCCAAGAGCUCUUCAGCCAGCUGGAUUAGCUCUUCCUGUUCGUGCACCCAAUCCUGCAUGAACUGUCGGAUCUCCAGCAGGUCCUGU
---------(((((.(((((((.(((((....)))))..)))))))...(((((((((........)))))))))....((....)).)))))...... ( -31.70)
>DroSec_CAF1 16873 97 - 1
--CUUCUCCUCUACCAAGAGCUCUUCAGCCAGCUGGAUUAGCUCUUCCUGUUCGUGCACCCAAUCCUGCAUGAACUGUCGAAUCUCCAGCAGGUCUUGU
--.....(((((...(((((((.(((((....)))))..)))))))...(((((((((........)))))))))............)).)))...... ( -27.40)
>DroSim_CAF1 31961 99 - 1
GACUUCUCCUCUACCAAGAGCUCUUCAGCCAGCUGUAUUAGCUCUUCCUGUUCGUGCACCCAAUCCUGCAUGAAUUUUCGGAUCUCCAGCAGGUCUUGU
(((((((......(((((((((...(((....)))....)))))))...(((((((((........)))))))))....))......)).))))).... ( -27.20)
>DroEre_CAF1 16241 97 - 1
--UUUAUCCUCCACCAAGAGCUCCUCAGCUAGUUGGAUCAGCUCUUCCUGUUCGUGCACCCAACCCUGCAUGAACUGGCGUAUCUCCAGCAGGUCCUGU
--..........(((...((((....)))).((((((...((....((.(((((((((........))))))))).)).))...)))))).)))..... ( -27.40)
>DroYak_CAF1 19107 97 - 1
--UUUAUCCUCCAUCAAGAGCUGCUCAGCUAGUUGGAUCAGCGUCUCCUGUUCGUGCACCCAAUCCUGCAUGAACUGGCGUAUCUCCAGCAGGUCCUGU
--.....(((........((((....)))).((((((...(((((....(((((((((........))))))))).)))))...)))))))))...... ( -32.10)
>DroMoj_CAF1 6545 97 - 1
--AUACUCCGCUUGCAGCAGUUGCUCGGCCAGCUGGAGUAUCUUGUCCUGUUCAUCCACCCACUGCUUCAUAAAAUUGUGAAUCUCCUGCAGGUCGUGC
--((((((((((.(((((....)))..)).))).)))))))...............(((...((((((((((....))))))......))))...))). ( -26.10)
>consensus
__CUUCUCCUCUACCAAGAGCUCCUCAGCCAGCUGGAUUAGCUCUUCCUGUUCGUGCACCCAAUCCUGCAUGAACUGGCGAAUCUCCAGCAGGUCCUGU
...........................(((.((((((............(((((((((........))))))))).........)))))).)))..... (-17.74 = -18.05 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:49 2006