Locus 4049

Sequence ID X_DroMel_CAF1
Location 10,732,434 – 10,732,531
Length 97
Max. P 0.796055
window6654

overview

Window 4

Location 10,732,434 – 10,732,531
Length 97
Sequences 3
Columns 99
Reading direction forward
Mean pairwise identity 72.73
Mean single sequence MFE -24.57
Consensus MFE -11.86
Energy contribution -12.53
Covariance contribution 0.67
Combinations/Pair 1.14
Mean z-score -2.40
Structure conservation index 0.48
SVM decision value 0.60
SVM RNA-class probability 0.796055
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10732434 97 + 22224390
AAAUCAUCAGGUGUCAUAAGUUUGGUGCGAACUCUACUUACUCAUUAGAGUUCCCAGUGAUUAGAGUUAUUGGAGAAACGUACAGACAGGCUAUAGA--
..................((((((((((((((((((.........))))))))((((((((....))))))))......))))...)))))).....-- ( -24.00)
>DroEre_CAF1 8642 80 + 1
GAAUCAUCAGGUGUCAAACGUUUGGCGAGAACGCUA----CUCAUUAU---GGUCAAUGAUUAGAGUUCUUGGAGA------------CGCCAUAAAGA
.........((((((...(....).(((((((.(((----.(((((..---....))))).))).)))))))..))------------))))....... ( -23.30)
>DroYak_CAF1 8548 88 + 1
AAAUCAUUAGGUGUCAAACGUUUGGCGAGAACUCUA----CUCAUUAU---UGCCAAUGAUUAGAGUUCUAGGAGAAGCG----GACAUGCCAUAAAGA
.........(((((....(((((..(.(((((((((----.(((((..---....))))).)))))))))..)..)))))----...)))))....... ( -26.40)
>consensus
AAAUCAUCAGGUGUCAAACGUUUGGCGAGAACUCUA____CUCAUUAU___UGCCAAUGAUUAGAGUUCUUGGAGAA_CG____GACACGCCAUAAAGA
.........(((((((......))))((((((((((.....(((((.........))))).))))))))))..................)))....... (-11.86 = -12.53 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:15:05 2006