Locus 4044

Sequence ID X_DroMel_CAF1
Location 10,708,851 – 10,708,945
Length 94
Max. P 0.712819
window6647

overview

Window 7

Location 10,708,851 – 10,708,945
Length 94
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 78.79
Mean single sequence MFE -21.68
Consensus MFE -10.93
Energy contribution -11.17
Covariance contribution 0.25
Combinations/Pair 1.13
Mean z-score -2.38
Structure conservation index 0.50
SVM decision value 0.38
SVM RNA-class probability 0.712819
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10708851 94 - 22224390
UAUAUGGUAAGUGGUAUGUG--GUAUCCUAUGUACUAUGCCAUU--GUAAUUUAUGGUUUGAUCAUUUUGCAUUACCAGUUUAUCGGUAGCAUUCUAU
...(((((..((((((((((--(....))))))))))))))))(--((((...(((((...))))).)))))(((((........)))))........ ( -21.60)
>DroSec_CAF1 5431 85 - 1
---------AGUGGUAUGUG--GUAUUCUAUGUGCUAUGCUAUU--GUAUUUUAUGGUUUGAUCAUUCUGCAUUACCAAUUAAUCGGUAGCAUUCUAU
---------.((((((((((--(....)))))))))))((((((--(.(((...((((.((.........))..))))...))))))))))....... ( -21.60)
>DroEre_CAF1 5174 80 - 1
----------GUGGUAUGUGGGGUAUUCUAUGUGCUAUGC-------UAUUGUAUGGUUUGAUCUUUCUGCGUUACCAGU-CAUCGGUACCAUUCUAU
----------((((((((..(((...((.....(((((((-------....)))))))..))...)))..))).(((...-....))))))))..... ( -18.90)
>DroYak_CAF1 5253 83 - 1
----------GUGGCAUGUG--GUAUUCUAUGUGCUAUGCUAUGUGCUAUUGUAUGGUUUGAUUUUUCUGCAUUACCAGU-GAUCGGUACCAUUCU--
----------((((((((((--((((..........)))))))))))))).(.(((((((((((...(((......))).-)))))).))))).).-- ( -24.60)
>consensus
__________GUGGUAUGUG__GUAUUCUAUGUGCUAUGCUAUU__GUAUUGUAUGGUUUGAUCAUUCUGCAUUACCAGU_AAUCGGUACCAUUCUAU
..........((((((((((........))))))))))...............((((((((((....(((......)))...))))).)))))..... (-10.93 = -11.17 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:59 2006