Locus 4042

Sequence ID X_DroMel_CAF1
Location 10,694,710 – 10,694,806
Length 96
Max. P 0.577039
window6645

overview

Window 5

Location 10,694,710 – 10,694,806
Length 96
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 79.58
Mean single sequence MFE -44.45
Consensus MFE -26.58
Energy contribution -28.37
Covariance contribution 1.79
Combinations/Pair 1.40
Mean z-score -1.61
Structure conservation index 0.60
SVM decision value 0.09
SVM RNA-class probability 0.577039
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10694710 96 - 22224390
CCCGCCGGCUAAAGGUGCGUUGGCAAUGGGCGCACUGUAGACGUGCGGUCUGCUCGUGGCUGCGCGCCAAAUGGCUGCGCAGCUGUCGGAGAUGCG
.((((((.(((..((((((((.......)))))))).))).)).))))(((.((.(..((((((((((....))).)))))))..).))))).... ( -46.50)
>DroSec_CAF1 1711 96 - 1
CCCGCCGGCUAAAGGUGCGUUGGCAAUGGGCGCACUGUAGACGUGCGGUCUGCUCGUGGCUGCGCGCCAAAUGGCUGCGCAGCUGUCGGAGAUGCG
.((((((.(((..((((((((.......)))))))).))).)).))))(((.((.(..((((((((((....))).)))))))..).))))).... ( -46.50)
>DroEre_CAF1 1735 96 - 1
CCCGCCGGCUAAAGGUGCGCUGGCAAUGUGCGCACUGCAGUCGUGCGGUCUGCUCGUGACUGCGCGCCAAAUGGCUGCGAAGCUGUCGGAGAUGCG
.(((.(((((...(((((((.........)))))))(((...((((((((.......))))))))(((....))))))..))))).)))....... ( -44.20)
>DroYak_CAF1 1765 96 - 1
CCCGCCGGCUAAAAGUGCGCUGACAAUGGGCGCACUGAAGUCGUGCGGUUUGCUCGUGGCUGCGCGCCAAAUGGCUGCGCAGCUGUCGGAGAUGCG
.(((((((((...((((((((.......))))))))..))))).))))....((((..((((((((((....))).)))))))..)..)))..... ( -51.40)
>DroAna_CAF1 1655 96 - 1
CGCUCCGGGUGAAGGUCCGCGGGCAGUGGCCACACUGGAGACGAGCGGUCUGAUCGUGGCUCUUUGCCAGGUGGAUGCGCAGCUGCCGGAGAUGGG
(((((((((((...((((((.(((((.((((((.....((((.....))))....))))))..)))))..)))))).))).....)))))).)).. ( -41.50)
>DroPer_CAF1 1540 96 - 1
CCCUGCGGGUGAAGGCUGAUUGGCAGUGGGGACACUGGAGACGCUCAGUUUGGUUAUGACACCGUGCUAGAUGCGCUCUGAGCUGACGCAGAUGCG
..(((((......((((.(....(((((....)))))(((.((((((((.((((......)))).))).)).))))))).))))..)))))..... ( -36.60)
>consensus
CCCGCCGGCUAAAGGUGCGCUGGCAAUGGGCGCACUGGAGACGUGCGGUCUGCUCGUGGCUGCGCGCCAAAUGGCUGCGCAGCUGUCGGAGAUGCG
....(((((....(((((((.(.((.((((((.(((((......))))).)))))))).).)))))))....((((....)))))))))....... (-26.58 = -28.37 +   1.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:57 2006