Locus 4039

Sequence ID X_DroMel_CAF1
Location 10,674,003 – 10,674,104
Length 101
Max. P 0.648084
window6639

overview

Window 9

Location 10,674,003 – 10,674,104
Length 101
Sequences 4
Columns 118
Reading direction forward
Mean pairwise identity 83.87
Mean single sequence MFE -40.10
Consensus MFE -24.46
Energy contribution -24.52
Covariance contribution 0.06
Combinations/Pair 1.19
Mean z-score -2.02
Structure conservation index 0.61
SVM decision value 0.24
SVM RNA-class probability 0.648084
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10674003 101 + 22224390
----CAUGUCCCUAUCCUUUC-------ACUCUACCCACUAUCUUGCACCGACAAUCUUGGGCAGGACGAUCGG------GAUCGCCUGAUCCUGGAGAUGGAAGGUGUCAGCGGCGG
----..((((.((..((((((-------((((((.......((((((.((((.....)))))))))).((((((------(....))))))).))))).)))))))....)).)))). ( -37.80)
>DroSec_CAF1 1442 101 + 1
----CAUGUCCCUAUCCUUUC-------ACUCUCCCCACUAUCUUGCACCGUCAAUCUUGGGCAGGACGAUCGG------GAUCGCCCGAUCCUGGAGAUGGAAGGUGUCAGCGGCGG
----..((((.((..((((((-------(.(((((......((((((.(((.......))))))))).((((((------(....)))))))..))))))))))))....)).)))). ( -41.50)
>DroSim_CAF1 5672 101 + 1
----CAUGUCCCUAUCCUUUC-------ACUCUCCCCACUAUCUUGCAGCGUCAAUCUUGGGCAGGACGAUCGG------GAUCGCCCGAUCCUGGAGAUGGAAGGUGUCAGCGGCGG
----..((((.((..((((((-------(.(((((......((((((..((.......)).)))))).((((((------(....)))))))..))))))))))))....)).)))). ( -37.90)
>DroYak_CAF1 5487 118 + 1
CAGACAUGUCCCCAUUCUUCCCCAUUUCUUUUGCCCUGCUAUCUGGCACCAUCAAUCUUGGGCAGGACGAUCAGGAUCAGGUUGGCCUGAUCCUGGAGAUGGAAGGUGUCAGCGGCGG
..(((((.(..((((.(((.......((((((((((((((....))))...........)))))))).)).((((((((((....))))))))))))))))).).)))))........ ( -43.20)
>consensus
____CAUGUCCCUAUCCUUUC_______ACUCUCCCCACUAUCUUGCACCGUCAAUCUUGGGCAGGACGAUCGG______GAUCGCCCGAUCCUGGAGAUGGAAGGUGUCAGCGGCGG
......((((.((..((((((.........(((((......((((((.(((.......))))))))).((((((............))))))..))))).))))))....)).)))). (-24.46 = -24.52 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:52 2006