Locus 4036

Sequence ID X_DroMel_CAF1
Location 10,672,024 – 10,672,140
Length 116
Max. P 0.773952
window6635

overview

Window 5

Location 10,672,024 – 10,672,140
Length 116
Sequences 3
Columns 116
Reading direction forward
Mean pairwise identity 84.68
Mean single sequence MFE -32.53
Consensus MFE -25.03
Energy contribution -26.92
Covariance contribution 1.89
Combinations/Pair 1.03
Mean z-score -2.10
Structure conservation index 0.77
SVM decision value 0.54
SVM RNA-class probability 0.773952
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10672024 116 + 22224390
CGAUCCUUGAUCUCGUCGCCAGCUGCACCUGCAGCAGAUCGUUGCCUGUGCUUGUUGGUUUUUCGGCUCACUCCACAGUUUCGAGACUGGCCAUUUCUCACUCGCUUGUUGGCCAA
.((((...))))..(((((((((.((((..(((((.....)))))..))))..))))))...((((..(........)..)))))))((((((................)))))). ( -36.19)
>DroEre_CAF1 2345 112 + 1
CGAUCCUUGAUCUCGUCGCCAGCUGCACCUGCAGCAGAUCGCUGCUUGUGCUUGUUGGUUUUUCGGCUCACUCCAC--UUUC--GACUGACCAUUUCUCACUCGCUUGUUGGCCAA
.((((...)))).....((((((.((((..(((((.....)))))..))))..)))))).....((((.((.....--...(--((.(((.......))).)))...)).)))).. ( -34.30)
>DroYak_CAF1 3392 95 + 1
CGAUCCUUGAUCUCGUCGCCAGCUGCACCUG-------------------CUUGUUGGUUUUGCGGCUCACUCCAC--UUUCGCGACUGGCCAUUUCUCACUCGCUUGUUGGCCAA
.((((...))))..(((((.(((((((...(-------------------((....)))..)))))))........--....)))))((((((................)))))). ( -27.11)
>consensus
CGAUCCUUGAUCUCGUCGCCAGCUGCACCUGCAGCAGAUCG_UGC_UGUGCUUGUUGGUUUUUCGGCUCACUCCAC__UUUCG_GACUGGCCAUUUCUCACUCGCUUGUUGGCCAA
.((((...))))..(((((((((.((((..(((((.....)))))..))))..)))))).....((......))..........)))((((((................)))))). (-25.03 = -26.92 +   1.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:48 2006