| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,658,447 – 10,658,557 |
| Length | 110 |
| Max. P | 0.544910 |
| Location | 10,658,447 – 10,658,557 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.79 |
| Mean single sequence MFE | -32.80 |
| Consensus MFE | -25.81 |
| Energy contribution | -25.40 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.544910 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10658447 110 - 22224390 UCGCCGACCUGGAACUCUCAAAGGAGGAUCGUGAACAGAUCUUCGAUCCGCCACUGGAUCGACAGCAGUUGGAAGGUGCUGGCACCUCAAGGUAUGUACCC------CA-AUGCAAC--- ...((((((((...((((....))))(((((....).)))).((((((((....)))))))))))..)))))..(((((....(((....)))..))))).------..-.......--- ( -33.00) >DroPse_CAF1 18553 106 - 1 UCGCCGACUUGGAGCUAUCGAAGGAGGAUCGCGAACAGAUCUUCGAUCCGCCAUUGGAUCGGCAGCAGUUGGAAGGUGCUGGCACCUCAAGGUAUGUAUAC------AA-AAA------- ..(((..(((.((....)).)))(((((((.......)))))))((((((....))))))))).(((....((.((((....))))))......)))....------..-...------- ( -33.80) >DroGri_CAF1 34147 110 - 1 UCGCCGAUUUGGAAUUAUCAAAAGAGGAUCGUGAGCAAAUCUUUGAUCCGCCAUUGGAUCGGCAGCAAUUGGAAGGUGCUGGCACCUCAAGGUAUUUAUCC------AUUUU-CAUU--- ..(((((((..(.....((....))((((((.((.....))..))))))....)..))))))).(.((.(((((((((....)))))...........)))------).)).-)...--- ( -30.90) >DroWil_CAF1 16636 119 - 1 UUGCCGAUUUGGAAUUAUCGAAGGAAGAUCGUGAACAAAUCUUCGAUCCGCCAUUGGAUCGACAGCAAUUGGAAGGUGCUGGCACCUCAAGGUAUGUCCCUAGAAAACU-AAUUAACUAA ..((.((((((..((.(((.......))).))...)))))).((((((((....))))))))..))((((((..((((....))))((.(((......))).))...))-))))...... ( -31.30) >DroAna_CAF1 18243 119 - 1 UCGCCGACCUGGAACUAUCGAAGGAGGAUCGGGAACAGAUCUUCGACCCACCACUAGAUCGACAGCAGUUGGAAGGUGCUGGCACCUCAAGGUACGUACUUUCUUCUCC-AUCUAACUGU ..(.(((.((((..((.....))((((((((....).))))))).........)))).))).).((((((((((((((....))))).(((((....))))).......-.))))))))) ( -34.00) >DroPer_CAF1 17528 106 - 1 UCGCCGACUUGGAGCUAUCGAAGGAGGAUCGCGAACAGAUCUUCGAUCCGCCAUUGGAUCGGCAGCAGUUGGAAGGUGCUGGCACCUCAAGGUAUGUAUAA------AA-AAA------- ..(((..(((.((....)).)))(((((((.......)))))))((((((....))))))))).(((....((.((((....))))))......)))....------..-...------- ( -33.80) >consensus UCGCCGACUUGGAACUAUCGAAGGAGGAUCGUGAACAGAUCUUCGAUCCGCCAUUGGAUCGACAGCAGUUGGAAGGUGCUGGCACCUCAAGGUAUGUACCC______AA_AAA_AAC___ ...((((((((............(((((((.......)))))))((((((....))))))..)))..))))).(((((....)))))................................. (-25.81 = -25.40 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:45 2006