Locus 4032

Sequence ID X_DroMel_CAF1
Location 10,657,741 – 10,657,837
Length 96
Max. P 0.728208
window6630

overview

Window 0

Location 10,657,741 – 10,657,837
Length 96
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 91.61
Mean single sequence MFE -31.23
Consensus MFE -29.70
Energy contribution -30.37
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 0.95
SVM decision value 0.42
SVM RNA-class probability 0.728208
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10657741 96 + 22224390
AGGGCCAUCGCAUGAGGGGCAAACUUCAUGUUAUUUGGCGUGAUAAUUUGUGCAAUUGUGGAUUGCCUGUGUGCAGGGCAGAUUGCAGAUCACAGA-----------
...((((..((((((((......))))))))....))))(((((......(((((((...(....((((....)))).).))))))).)))))...----------- ( -33.10)
>DroEre_CAF1 15389 96 + 1
AGGACCAUCGCUUGAGGGGCAAACUUCAUGUUAUUUGGCGUGAUAAUUUGUGCAAUUGUGGAUUGCCUGUGUGCAGGGCAGAUUGCAGAUCACAGA-----------
......(((((.(((((......))))).(((....))))))))..((((((...(((..(.((((((.......)))))).)..)))..))))))----------- ( -25.30)
>DroYak_CAF1 16104 107 + 1
AGGGCCAUCGCAUGAGGGGCAAACUUCAUGUUAUUUGGCGUGAUAAUUUGUGCAAUUGUGGAUUGCCUGUGUGCAGGGCAGAUUGCAGAUCACAGAUCGUAGAUCUC
...((((..((((((((......))))))))....))))(((((......(((((((...(....((((....)))).).))))))).)))))(((((...))))). ( -35.30)
>consensus
AGGGCCAUCGCAUGAGGGGCAAACUUCAUGUUAUUUGGCGUGAUAAUUUGUGCAAUUGUGGAUUGCCUGUGUGCAGGGCAGAUUGCAGAUCACAGA___________
...((((..((((((((......))))))))....)))).......((((((...(((..(.((((((.......)))))).)..)))..))))))........... (-29.70 = -30.37 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:44 2006