Locus 4031

Sequence ID X_DroMel_CAF1
Location 10,654,070 – 10,654,160
Length 90
Max. P 0.877171
window6629

overview

Window 9

Location 10,654,070 – 10,654,160
Length 90
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 79.12
Mean single sequence MFE -24.85
Consensus MFE -10.62
Energy contribution -10.99
Covariance contribution 0.36
Combinations/Pair 1.05
Mean z-score -2.82
Structure conservation index 0.43
SVM decision value 0.90
SVM RNA-class probability 0.877171
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10654070 90 + 22224390
-UUUAGUCUCAA----CGCUGAGCAUGUGUG-CGU----UGUCGUU--CGAAUUCUUGGAAAUUUCUAAUGAACACGAACACAAAAAGGAGCACACAAAAAU
-....(.((((.----...))))).((((((-(.(----(((.(((--((..((((((((....))))).)))..)))))))))......)))))))..... ( -26.70)
>DroPse_CAF1 13671 88 + 1
GUGUGU----------UUCUGUGUGUGUGUGUCGU----UGUCGCUGUGGAAUUCUUGGAAAUUUCUAAUGAACACAAACUCAAAAAGGAGCACACAAAAAU
((((((----------((((.((.((.((((((((----((.......((((((......))))))))))).))))).)).))...))))))))))...... ( -26.61)
>DroSec_CAF1 11716 94 + 1
-UUUAGUCAGCAGCGUUGCUGCGCAUGUGUG-CGU----UGUCGUU--CGAAUUCUUGGAAAUUUCUAAUGAACACGAACACAAAAAGGAGCACACAAAAAU
-........(((((...)))))...((((((-(.(----(((.(((--((..((((((((....))))).)))..)))))))))......)))))))..... ( -30.90)
>DroSim_CAF1 9800 90 + 1
-UUUAGUCUCCA----CGCUGCGCAUGUGUG-CGU----UGUCGUU--CUAAUUCUUGGAAAUUUCUAAUGAACACCAACACAAAAAGGAGCACACAAAAAU
-....((((((.----....((((....)))-)((----((..(((--(......(((((....))))).))))..)))).......)))).))........ ( -21.60)
>DroMoj_CAF1 13744 78 + 1
--------------------GUAUGUGUGUG-UGUUGUGUGUCGCU---GAAUUCUUGGAAAUUUCUAAUGAACACAAACACAAAAAGGAGCACACAAAAAU
--------------------...(((((((.-..((((((.....(---(..((((((((....))))).)))..)).))))))......)))))))..... ( -18.80)
>DroAna_CAF1 12787 91 + 1
UUCUACUUCCCA----GGCAGUGUGUGUGUG-CGU----UGUCGUU--GGAAUUCUUGGAAAUUUCUAAUGAACGCAAACACAUAAAGGAGCACACAAAAAU
......((((..----.....(((((((.((-(((----..(((((--((((...........)))))))))))))).)))))))..))))........... ( -24.50)
>consensus
_UUUAGUC_CCA____CGCUGUGCAUGUGUG_CGU____UGUCGUU__CGAAUUCUUGGAAAUUUCUAAUGAACACAAACACAAAAAGGAGCACACAAAAAU
.........................((((((.(......(((.(((......((((((((....))))).)))....)))))).......)))))))..... (-10.62 = -10.99 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:43 2006