| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,645,559 – 10,645,654 |
| Length | 95 |
| Max. P | 0.982330 |
| Location | 10,645,559 – 10,645,654 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 84.97 |
| Mean single sequence MFE | -17.62 |
| Consensus MFE | -15.28 |
| Energy contribution | -16.88 |
| Covariance contribution | 1.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.91 |
| SVM RNA-class probability | 0.982330 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10645559 95 - 22224390 CAUCUUUAUCUGUAUUCUCUCAGUGCUGCCAGAAUACGGGUGAAGAAUCUAAAAAUUAUAACGAAAUAUUAUUCAAGCUA--CAAAC-AGUCUUCAUA ..((((((((((((((((..((....))..))))))))))))))))................(((......)))......--.....-.......... ( -20.70) >DroSec_CAF1 2939 97 - 1 CAUCUUUAUCUGUAUUCUCUCAGUGCUGCCAGAAUACGGGUGAAGUAUCUAAAAAUUAUAAAGAAAUAUUAUUCAAGCUAUACAAAC-UGUCUUCAUA ...(((((((((((((((..((....))..))))))))))))))).................(((......))).............-.......... ( -18.30) >DroSim_CAF1 1981 98 - 1 CAUCUUUAUCUGUAUUCUCUCAGUGCUGCCAGAAUACGGGUGAAGAAUCUAAAAAUUAUAAAGAAAUAUUAUUCAAGCUAUACAAACUUGUCUUCAUA ..((((((((((((((((..((....))..))))))))))))))))...........................((((.........))))........ ( -21.00) >DroEre_CAF1 3091 82 - 1 AAUCUUUAUCUGUAUUCUCUCAGUGCUGCCAGAAUACGGGU-------CUAAAAAUUA--AAACAAU---AUUCAAUCCA---CAAC-AGGCUUCAAA .......(((((((((((..((....))..)))))))))))-------..........--.......---..........---....-.......... ( -12.00) >DroYak_CAF1 3144 92 - 1 AAUCUUUAUCUGUAUUCUCUCAGUGCUGCCAGAAUACUGGUCAAGAAUCUAAAAAAUA--AAAAAAUCUUGUUCAAGCUA---AAAC-AGGCUUCAAA ..((((.(((.(((((((..((....))..))))))).))).))))............--..............(((((.---....-.))))).... ( -16.10) >consensus CAUCUUUAUCUGUAUUCUCUCAGUGCUGCCAGAAUACGGGUGAAGAAUCUAAAAAUUAUAAAGAAAUAUUAUUCAAGCUA__CAAAC_AGUCUUCAUA ..((((((((((((((((..((....))..)))))))))))))))).................................................... (-15.28 = -16.88 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:36 2006