| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,644,818 – 10,644,914 |
| Length | 96 |
| Max. P | 0.999168 |
| Location | 10,644,818 – 10,644,914 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 82.76 |
| Mean single sequence MFE | -21.58 |
| Consensus MFE | -17.00 |
| Energy contribution | -17.01 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -4.14 |
| Structure conservation index | 0.79 |
| SVM decision value | 3.41 |
| SVM RNA-class probability | 0.999168 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10644818 96 + 22224390 UACCUAUGUA------UAUCUAAGCC-CAA---AACAAGACUCCCAUGGAAAACCUCAU---AGAAAUCAAUGGUUUUUCAUGAGAGAUCUGCAAAUCCCCUUAAAAGA ..........------....((((..-...---....((((((.(((((((((((....---(....)....))))))))))).))).))).........))))..... ( -20.57) >DroSec_CAF1 2180 105 + 1 UACCUGUGUAUAUCUAUAUCUAAGCC-CAACAACACAAGACUCCCAUGGAAAACCUCAU---AGAAAUCAAUGGUUUUUCAUGAGAGAUCUGCAAAUCCCCUUAAAAGA ....(((((.................-.....)))))((((((.(((((((((((....---(....)....))))))))))).))).))).................. ( -21.25) >DroEre_CAF1 2254 87 + 1 UACCUA--------UAUAUCUAAGCCCCAA---CACAUAACUCCCAUGGAAAACCUCAU---AGAAAUCAAUGGUUUUUCAUGAGAGAUCUGAAAAUCCCC-------- ......--------................---.......(((.(((((((((((....---(....)....))))))))))).)))..............-------- ( -17.30) >DroYak_CAF1 2184 94 + 1 UACCUA--------U--AUCUAAGCC-CAA---CACAAGACUCCCAUGGAAAACCUCACAACAGAAAUCAAUGGUUUUUCAUGGGAGAUCUGAAAAUCCCCUUA-AAGA ......--------.--...((((..-...---....((((((((((((((((((.................))))))))))))))).))).........))))-.... ( -27.20) >consensus UACCUA________U_UAUCUAAGCC_CAA___CACAAGACUCCCAUGGAAAACCUCAU___AGAAAUCAAUGGUUUUUCAUGAGAGAUCUGAAAAUCCCCUUA_AAGA ........................................(((.(((((((((((.................))))))))))).)))...................... (-17.00 = -17.01 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:36 2006