Locus 4025

Sequence ID X_DroMel_CAF1
Location 10,642,071 – 10,642,174
Length 103
Max. P 0.944257
window6615

overview

Window 5

Location 10,642,071 – 10,642,174
Length 103
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 79.54
Mean single sequence MFE -13.78
Consensus MFE -10.50
Energy contribution -9.83
Covariance contribution -0.66
Combinations/Pair 1.13
Mean z-score -2.02
Structure conservation index 0.76
SVM decision value 1.34
SVM RNA-class probability 0.944257
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10642071 103 - 22224390
AAAAAUAGCCAAGGCAGGGUUUUCUACUGUUGAUACUACCUCCACAGCACACCCAUAAGAUUCAAU-------ACCCCAAGACCCAAAAGCACCCACCACAA--------UUUACAAC
.......((....)).(((((((....((((((............................)))))-------)....))))))).................--------........ ( -13.69)
>DroSec_CAF1 23465 118 - 1
AACAAUAGCCAAGGCAGGGUUUUCUACUGUUAAUACUACCUCCAUAGCACACCCAUAAGUUUCAAUACCCAAUACCCCAAGACCCAAAAGCACCCAGCACAAUUUAACAAUUUACAAC
.......((....)).(((((((....(((((............))))).........((......))..........)))))))....((.....)).................... ( -11.40)
>DroEre_CAF1 24340 98 - 1
AACAAUAGCCAAGGCAGGGUUUUCUACUGUUGAUACUACCUCCACAACACACCAAUAAGUUUCAAU-------ACCACAAGACCCAAA-------------AUUUAACAAUUUACAAC
.......((....)).(((((((....((((((.(((....................))).)))))-------)....)))))))...-------------................. ( -16.25)
>consensus
AACAAUAGCCAAGGCAGGGUUUUCUACUGUUGAUACUACCUCCACAGCACACCCAUAAGUUUCAAU_______ACCCCAAGACCCAAAAGCACCCA_CACAAUUUAACAAUUUACAAC
.......((....)).(((((((....(((((............)))))(........)...................)))))))................................. (-10.50 =  -9.83 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:31 2006