| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,638,004 – 10,638,123 |
| Length | 119 |
| Max. P | 0.892345 |
| Location | 10,638,004 – 10,638,123 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 88.50 |
| Mean single sequence MFE | -25.97 |
| Consensus MFE | -20.58 |
| Energy contribution | -20.82 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.892345 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10638004 119 - 22224390 CAAAAUUCUAAGAAACUAUCUAAUUUGGCAUGAGGGUAGCAUUUUAUAAAUCCCAGAGUACAGUUGACACCAAGUGUACAAAGCUUUUUGAGUACAAUCUACUUACAAGGUUGCCACCA .........................((((....(((...............)))...(((((.(((....))).)))))..((((((.((((((.....)))))).))))))))))... ( -25.76) >DroSec_CAF1 19548 116 - 1 CAAAACUUUAAGAAACUACCUAU-CUGGCAU-GGGGUAGCAUUUUAUAAAUCGCGGAGUACAGUUGAUACCAAGUGUACAAAGUUUUUU-AGUACAAUCUGCUUACAAGGUUGCCACCA ...((((((((((..((((((..-.......-.))))))..)))).......((((((((((.(((....))).)))))...((.....-...))..)))))....))))))....... ( -24.60) >DroSim_CAF1 18242 117 - 1 CAAAACUUUAAGAAACUACCUAA-CUGGCAUUAGGGUAGCAUUUUAUAAAUCCCGGAGUACAGUUGAUACCAAGUGUACAAAGCUUUUU-AGUACAAUCUGCUUACAAGGUUGCCACCA ........(((((..((((((..-.........))))))..)))))........((.(((((.(((....))).)))))..((((((..-((((.....))))...))))))....)). ( -23.10) >DroEre_CAF1 20369 118 - 1 CAAAACUCAAAGAAACCAUCCAA-UUGGCAUGAGGGUAGCAUUUUGAAAAUUCCACUGUACAGUUGACACCAAAUGUACAAAGCUUUUUGAGUACAAUCUACUUACAAGGUUGCCACCA .....((((......(((.....-.)))..))))(((.((................((((((.(((....))).)))))).((((((.((((((.....)))))).)))))))).))). ( -26.60) >DroYak_CAF1 19964 117 - 1 CAAAACUCAAA-AAACCAUUCAA-CUGGCAUGAGGGUAGCAUUUUGAAAAUCCCGCAGUACAGUUGACACCAACUGUACAAAGCUUUUCGAGUACAAUCUACUUACAAGGUUGCCACCA .....((((..-...(((.....-.)))..))))(((.((((((((........((.(((((((((....)))))))))...)).....(((((.....))))).))))).))).))). ( -29.80) >consensus CAAAACUCUAAGAAACUAUCUAA_CUGGCAUGAGGGUAGCAUUUUAUAAAUCCCGGAGUACAGUUGACACCAAGUGUACAAAGCUUUUUGAGUACAAUCUACUUACAAGGUUGCCACCA .........................((((....(((...............)))...(((((.(((....))).)))))..((((((.((((((.....)))))).))))))))))... (-20.58 = -20.82 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:28 2006