| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,630,004 – 10,630,099 |
| Length | 95 |
| Max. P | 0.500000 |
| Location | 10,630,004 – 10,630,099 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 85.32 |
| Mean single sequence MFE | -26.85 |
| Consensus MFE | -19.73 |
| Energy contribution | -20.15 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.73 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10630004 95 - 22224390 ACAUUCAUUUUGGCAAGCGUUUAGAAAGCGCCGUCGAAAACCUCGAAAGGGGUAAAUGAAAAACAAUUGGCCAUAUAUGCAUUU-UUGGUCAUG-------GC---- ...(((((((((((..(((((.....))))).)))))))(((((....)))))...)))).......((((((...........-.))))))..-------..---- ( -27.60) >DroSec_CAF1 11615 95 - 1 ACAUUCUUUUUGGCAAUCGUUUAGAAAGCGCCGUCGAAAACCUCGAAAGGGGUAAAUGAAAAACAAUUGGCCAUAUAUGAAUUU-UUGGCCAUG-------GC---- .((((..(((((((...((((.....))))..)))))))(((((....))))).)))).........((((((...........-.))))))..-------..---- ( -26.00) >DroSim_CAF1 11678 95 - 1 ACAUUCUUUUUGGCAAUCGUUUAGAAAGCGCCGUCGAAAACCUCGAAAGGGGUAAAUGAAAAACAAUUGGCCAUAUAUGCAUUU-UUGGCCAUG-------GC---- .((((..(((((((...((((.....))))..)))))))(((((....))))).)))).........((((((...........-.))))))..-------..---- ( -26.00) >DroEre_CAF1 11416 96 - 1 ACAUUCUUUUUGGCAAUCGUUUAGAAAGCGCUGUGGGAAACCUCGAAAGGGGUAAAUGAAAAACAAUUGGCCAUAUAUGCAUUUUUUGGCAGUG-------GC---- .((((..((((.(((..((((.....)))).))).))))(((((....))))).))))...........(((((...(((........))))))-------))---- ( -22.90) >DroYak_CAF1 12274 95 - 1 ACAUUCUUUUUGGCAAGCGUUUAGAAAGCGCCGUCGAAAACCUCGAAAGGGGUAAAUGAAAAACAAUUGGCCAUAUAUGCAUUU-UUGGCCAUG-------GC---- .((((..(((((((..(((((.....))))).)))))))(((((....))))).)))).........((((((...........-.))))))..-------..---- ( -29.40) >DroAna_CAF1 19983 100 - 1 -----UUUUGGGGCAGGCAUUUGGUGGACGCC-UCGAGAACCUCGAAAGGGGUAAAUGAAAAACAAUUGGCCAUAUAUGCAAUU-CGGGCCUCGAAACUAGGCGAAA -----(((((((((..((((.((((.((....-(((...(((((....)))))...))).......)).))))...))))....-...))))))))).......... ( -29.20) >consensus ACAUUCUUUUUGGCAAGCGUUUAGAAAGCGCCGUCGAAAACCUCGAAAGGGGUAAAUGAAAAACAAUUGGCCAUAUAUGCAUUU_UUGGCCAUG_______GC____ .......(((((((...(((((...)))))..)))))))(((((....)))))..............((((((.............))))))............... (-19.73 = -20.15 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:15 2006