Locus 4012

Sequence ID X_DroMel_CAF1
Location 10,627,737 – 10,627,857
Length 120
Max. P 0.892112
window6594

overview

Window 4

Location 10,627,737 – 10,627,857
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 93.11
Mean single sequence MFE -38.32
Consensus MFE -33.74
Energy contribution -33.29
Covariance contribution -0.44
Combinations/Pair 1.06
Mean z-score -1.72
Structure conservation index 0.88
SVM decision value 0.97
SVM RNA-class probability 0.892112
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10627737 120 - 22224390
AUUUCGCUGCCGGAGGCAUCUCCGCAGCUGUCUCCAAGACUGCCGUCGCCCCCAUUGAGCGUGUGAAACUGCUCCUGCAGGUUCAGCACAUCUCGAAACAAAUCAGCCCCGACAAGCAGU
.....(((((.((((....)))))))))..........(((((.((((........(((.(((((((.((((....)))).)))).)))..)))((......)).....))))..))))) ( -39.30)
>DroVir_CAF1 24273 120 - 1
ACUUCGCUGCCGGUGGCAUCUCCGCAGCUGUCUCAAAGACUGCCGUCGCACCCAUCGAGCGUGUGAAACUGCUGCUGCAGGUUCAGCACAUCUCGAAACAAAUCACCCCCGAUCAGCAAU
.....((((.(((.((......(((.((.(((.....))).)).).))......(((((.(((((((.((((....)))).)))).)))..))))).........)).)))..))))... ( -36.90)
>DroGri_CAF1 17481 120 - 1
ACUUCGCUGCCGGUGGUAUUUCCGCAGCUGUCUCAAAGACUGCCGUCGCACCCAUCGAGCGUGUGAAACUGCUCCUGCAGGUUCAGCACAUCUCGAAACAAAUCUCGCCCGAUCAGCAAU
.....((((..((((..((((.(((.((.(((.....))).)).).))......(((((.(((((((.((((....)))).)))).)))..)))))...))))..))))....))))... ( -36.60)
>DroWil_CAF1 14600 120 - 1
AUUUCGCUGCCGGUGGUAUCUCCGCAGCUGUCUCAAAGACUGCCGUCGCCCCAAUUGAGCGUGUGAAGCUGCUUCUGCAGGUUCAGCACAUCUCGAAACAAAUCAGCCCCGACAAGCAGU
.....((((((((.(((.....(((.((.(((.....))).)).).))......(((((.(((((((.((((....)))).)))).)))..))))).........))))))....))))) ( -37.90)
>DroMoj_CAF1 11790 120 - 1
ACUUCGCUGCCGGAGGUAUCUCCGCAGCUGUCUCAAAGACUGCCGUCGCACCCAUCGAGCGUGUGAAACUGCUUCUGCAGGUUCAGCACAUCUCGAAACAAAUCUCCCCCGAUCAGCAAU
.....(((((.((((....))))))))).........(((....)))((.....(((((.(((((((.((((....)))).)))).)))..))))).....(((......)))..))... ( -37.60)
>DroPer_CAF1 9926 120 - 1
ACUUCGCUGCCGGAGGCAUCUCCGCAGCUGUCUCAAAGACUGCCGUCGCCCCCAUCGAGCGUGUGAAGCUGCUUCUGCAGGUUCAGCACAUCUCGAAACAAAUCAGCCCCGAUAAGCAAU
.....(((..(((.(((.....(((.((.(((.....))).)).).))......(((((.(((((((.((((....)))).)))).)))..))))).........))))))...)))... ( -41.60)
>consensus
ACUUCGCUGCCGGAGGCAUCUCCGCAGCUGUCUCAAAGACUGCCGUCGCACCCAUCGAGCGUGUGAAACUGCUUCUGCAGGUUCAGCACAUCUCGAAACAAAUCACCCCCGAUAAGCAAU
.....(((((.((........))))))).(((.....)))(((.((((......(((((.(((((((.((((....)))).)))).)))..))))).............))))..))).. (-33.74 = -33.29 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:12 2006