Locus 4006

Sequence ID	X_DroMel_CAF1
Location	10,602,901 – 10,602,992
Length	91
Max. P	0.990095

overview

Window 6

Location	10,602,901 – 10,602,992
Length	91
Sequences	5
Columns	94
Reading direction	forward
Mean pairwise identity	94.90
Mean single sequence MFE	-35.68
Consensus MFE	-30.60
Energy contribution	-30.80
Covariance contribution	0.20
Combinations/Pair	1.00
Mean z-score	-2.10
Structure conservation index	0.86
SVM decision value	2.20
SVM RNA-class probability	0.990095
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10602901 91 + 22224390
AGGCGAA--CGGCCAAACAGGCUGGCGUUU-ACCGUUAUCGCAGCCGGUAGGGAUGGCACUUUCGCGUAACGGGAUGUGCUAGUGACAGCCAUU
.(((...--(((((.....)))))(((...-........))).)))(((.(...(((((((..((.....))..).))))))....).)))... ( -32.20)
>DroSec_CAF1 289 91 + 1
AGGCGAA--CGGCCAAACAGGCUGGCGUUU-ACCGUUAUCGCAGCCGGUAGGGAUGGCACUUUCGCGUAACGGGAAGUGCUAGUGACUGCCAUU
.(((...--(((((.....)))))(((...-........))).)))(((((...((((((((((.((...))))))))))))....)))))... ( -38.70)
>DroSim_CAF1 295 91 + 1
AGGCGAA--CGGCCAAACAGGCUGGCGUUU-ACCGUUAUCGCAGCCGGUAGGGAUGGCACUUUCGCCUAACGGGAAGUGCUAGUGACUGCCAUU
.(((...--(((((.....)))))(((...-........))).)))(((((...((((((((.(.((....)))))))))))....)))))... ( -38.90)
>DroEre_CAF1 289 91 + 1
AGGCGAA--CGGCCAAACAGGCUGGCCUUU-ACCGUUAUCGCAGCCGGUAGGGAUGGCACUUUCGAGUAACGGGAAGUGCUAGUGACAGCCCUU
.(((...--..))).....(((((..((((-((((..........)))))))).((((((((((........))))))))))....)))))... ( -35.20)
>DroYak_CAF1 299 94 + 1
AGGCGAACACGGCCAAACAGGCUGGCAUUUAACCGUUAUCGCAGCCCGUAGGGAUGGCACUUUCGAGUAACGGGAAGUGCUAGUGACAGCCAUU
.(((...(((((((.....))))(((((((..(((((...((..(((...)))...))(((....)))))))).))))))).)))...)))... ( -33.40)
>consensus
AGGCGAA__CGGCCAAACAGGCUGGCGUUU_ACCGUUAUCGCAGCCGGUAGGGAUGGCACUUUCGCGUAACGGGAAGUGCUAGUGACAGCCAUU
.(((.....(((((.....)))))..............((((..((....))..((((((((((........))))))))))))))..)))... (-30.60 = -30.80 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:14:05 2006