| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,595,871 – 10,595,971 |
| Length | 100 |
| Max. P | 0.625466 |
| Location | 10,595,871 – 10,595,971 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 94.31 |
| Mean single sequence MFE | -23.94 |
| Consensus MFE | -22.10 |
| Energy contribution | -22.70 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.625466 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10595871 100 + 22224390 AAAACGUUUGUGCAUAAAUUCACUUGGUUAGCAGAAUUUGCCGGAAGGCCUUAUAAGCAAUUACGCUUCCUAACGGAUGUCGAGUUGUACACGGAAAAAA----- ....(((..(((((...((((((((.(((((........(((....))).....((((......)))).))))).)).)).)))))))))))).......----- ( -24.20) >DroSec_CAF1 4740 100 + 1 AAAACGUUUGUGCAUAAAUUCACUUGGUUAACAGAAUUCGCCGGAAGGCCUUAUAAGCAAUUACGCUUCCUAACGGAUGUCGAGUUGUACACGGAAAAAA----- ......((((((....(((((...((.....))))))).(((....))).......((((((.(((.(((....))).).)))))))).)))))).....----- ( -22.70) >DroSim_CAF1 4768 102 + 1 A-AACGUUUGUGCAUAAAUUCACUUGGUUAGCAGA-CUCGCCGGAAGGC-UUAUAAGCAAUUACGCUUCCUAACGGAUGUCGAGUUGUACACGGAAAAAAACUAG .-..(((..(((((...((((((((.(((((....-...(((....)))-....((((......)))).))))).)).)).))))))))))))............ ( -24.90) >DroEre_CAF1 4774 100 + 1 AAAACGUUUGUGCAUAAAUUCACUUGGUUAGCAGAAUUCGCCGGAAGGCCUUAUAAGCAAUUACGCUUCCUAACGGAUGUCGAGUUGUACACGGAAAGAA----- ....(((..(((((...((((((((.(((((........(((....))).....((((......)))).))))).)).)).)))))))))))).......----- ( -24.50) >DroYak_CAF1 4886 100 + 1 AAAACGUUUGUGCAUAAAUUCACUUGGUUAACAGCAUUCGCCGGAAGGCCUUAUAAGCAAUUACGCUUCCCAACGGAUGUCGAGUUGUACACGGAAAAAA----- ....(((..(((((...((((...((.....))(((((((((....))).....((((......))))......)))))).)))))))))))).......----- ( -23.40) >consensus AAAACGUUUGUGCAUAAAUUCACUUGGUUAGCAGAAUUCGCCGGAAGGCCUUAUAAGCAAUUACGCUUCCUAACGGAUGUCGAGUUGUACACGGAAAAAA_____ ....(((..(((((...((((((((.(((((........(((....))).....((((......)))).))))).)).)).))))))))))))............ (-22.10 = -22.70 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:59 2006