Locus 4000

Sequence ID X_DroMel_CAF1
Location 10,593,843 – 10,593,937
Length 94
Max. P 0.869316
window6577

overview

Window 7

Location 10,593,843 – 10,593,937
Length 94
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 90.69
Mean single sequence MFE -23.41
Consensus MFE -18.22
Energy contribution -18.66
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.94
Structure conservation index 0.78
SVM decision value 0.86
SVM RNA-class probability 0.869316
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10593843 94 + 22224390
CGCUAUAUAUAUCU----------AAAGCGCAACGCGUUGGUUGGCCGCUUACUUAUUUUGCACGCUAUAUGUAUAUAGAUGUUAAUCUCUAUUUGUAUAGUGU
.((...(((.....----------.(((((((((......))))..)))))...)))...))((((((((((.(((.((((....)))).))).)))))))))) ( -22.50)
>DroSec_CAF1 2762 94 + 1
UGCUAUAUAUAUCC----------CAAGCGCAACGCGUUGGUUGGCCGCUUACUUAUUUUGCACGCUAUAUGUAUAUAGAUGUUAAUCUCUAUUUGUAUAGUGU
.((...(((.....----------.(((((((((......))))..)))))...)))...))((((((((((.(((.((((....)))).))).)))))))))) ( -22.20)
>DroSim_CAF1 2778 94 + 1
UGCUAUAUAUAUCC----------CAAGCGCAACGCGUUGGUUGGCCGCUUACUUAUUUUGCACGCUAUAUGUAUAUAGAUGUUAAUCUCUAUUUGUAUAGUGU
.((...(((.....----------.(((((((((......))))..)))))...)))...))((((((((((.(((.((((....)))).))).)))))))))) ( -22.20)
>DroEre_CAF1 2820 104 + 1
UGCUAUAUAUAUCUUUAUCUACAUCAAGUGCAACGCGUUGGUUGGCCGCUUACUUAUUUGGCACGCUAUAUGUACAUAGAUGUUAAUCUCUAUUUGUAUAGUGU
.((((((((...........(((((..(((((..((((.((....))(((.........)))))))....)))))...)))))...........)))))))).. ( -24.15)
>DroYak_CAF1 2832 104 + 1
UGCUAUAUAUAUCUUUAUCUACAUCAAGCGCAACGCGUUGGUUGGCCGAUUACUUAUUUGGCACGCUAUAUGUACAUAGAUGUUAAUCUCUAUUUGUAUAGUGU
.((((((((......(((.(((((..((((((((......))))(((((........))))).))))..))))).)))(((....)))......)))))))).. ( -26.00)
>consensus
UGCUAUAUAUAUCU__________CAAGCGCAACGCGUUGGUUGGCCGCUUACUUAUUUUGCACGCUAUAUGUAUAUAGAUGUUAAUCUCUAUUUGUAUAGUGU
.........................(((((((((......))))..)))))...........((((((((((.(((.((((....)))).))).)))))))))) (-18.22 = -18.66 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:56 2006