Locus 40

Sequence ID X_DroMel_CAF1
Location 174,403 – 174,507
Length 104
Max. P 0.587428
window49

overview

Window 9

Location 174,403 – 174,507
Length 104
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 75.58
Mean single sequence MFE -32.24
Consensus MFE -13.55
Energy contribution -14.05
Covariance contribution 0.50
Combinations/Pair 1.07
Mean z-score -2.01
Structure conservation index 0.42
SVM decision value 0.11
SVM RNA-class probability 0.587428
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 174403 104 - 22224390
AUACGCAGGCUGCCCAAAAUUUCUACCCACCUUUCUACCAUGAGGCUCCUCCACUGGGCCAUUCCAGACCUUACUUUGG---UCACGGCCCGCCUGUAUCGGAAACA
....((((((.(((.............................(((.((......)))))......((((.......))---))..)))..))))))...(....). ( -30.60)
>DroGri_CAF1 4291 105 - 1
AUAGUCAGGCGGCGCAGAAUUUCUAUCCACCGUUCUAUCAUGAGGCGCCACCAUUGGGCCAUUCGCGUCCCUAUUUCUCUGGACCCGCUGUCCCCGUU--GGCGAUA
...((((((.(((((((.....))........(((......)))))))).))...(((.((..((.((((..........)))).)).)).)))...)--))).... ( -28.50)
>DroSec_CAF1 9933 104 - 1
AUACGCAGGCUGCCCAAAAUUUCUACCCACCUUUCUACCAUGAGGCUCCUCCACUGGGCCACUCCAGACCCUAUUUUGG---ACACGGCACGCCUGUAUCGGAGACA
....((((((((((.............................(((.((......)))))..((((((......)))))---)...)))).))))))...(....). ( -31.90)
>DroYak_CAF1 9639 104 - 1
AUACGCAGGCUGCGCAAAAUUUUUAUCCACCAUUCUACCAUGAGGCUCCUCCAUUGGGCCAUUCCAGACCCUAUUUCGG---CCACGGCCCGCCUGUAUCGGAAACA
....((((((...............................(((....)))....(((((...((.((.......))))---....)))))))))))...(....). ( -26.10)
>DroMoj_CAF1 26976 105 - 1
ACAGCCAGGCGGCGCAGAACUUCUAUCCGCCCUUCUACCAUGAGGCGCCGCCACUGGGCCACUCGCGUCCCUAUUUCGCCGGACCCGCUGGGCCCGUG--GCCGACA
.(.((((((((((((((.....))........(((......)))))))))))...(((((...((.((((..........)))).))...))))).))--)).)... ( -43.90)
>DroAna_CAF1 20066 101 - 1
ACUCCCAGGCGGCCCAGAACUUCUAUCCGCCCUUCUACCACGAGGCCCCACCACUGGGCCACUCUCGUCCUUACUUCGG---CCAUGGU---CCUGUCUCGGAGAGC
.((((..(((((...((.....))..)))))..........(((((...((((...((((.................))---)).))))---...)))))))))... ( -32.43)
>consensus
AUACGCAGGCGGCCCAAAAUUUCUAUCCACCCUUCUACCAUGAGGCUCCUCCACUGGGCCACUCCAGACCCUAUUUCGG___ACACGGCCCGCCUGUAUCGGAGACA
.....(((((...((..................((......))(((.((......)))))..........................))...)))))........... (-13.55 = -14.05 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:05 2006