Locus 4

Sequence ID X_DroMel_CAF1
Location 20,548 – 20,664
Length 116
Max. P 0.716399
window4

overview

Window 4

Location 20,548 – 20,664
Length 116
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 86.55
Mean single sequence MFE -21.83
Consensus MFE -17.83
Energy contribution -18.17
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.00
Structure conservation index 0.82
SVM decision value 0.39
SVM RNA-class probability 0.716399
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 20548 116 + 22224390
GUUACACACUUUUCAAAAAAAUUUUAGUAUUAAUUCUUACUCUACAUGUAACGGAUAAAAUAAUGUAGUUCCA--GAGGAGUUUGUACUCUUGUGGGAAUUUUAUAUUUAUUUACCAC
((((((...((((....))))....((((........)))).....))))))((.((((..((((((((((((--.((((((....)))))).)))))...)))))))..)))))).. ( -23.70)
>DroSec_CAF1 7934 106 + 1
AAUAC------------CAAAUUUUAGUAUUAAUUCUUACUCUACAAGUAACCGGUAAAAUAAUGUAGUUCCAAAGAGGAGUUUGUACUCUUGUGGGAAUUAAAUAUUUAUUUACCAC
(((((------------.........))))).....(((((.....)))))..((((((..(((((((((((..(.((((((....)))))).).))))))..)))))..)))))).. ( -20.90)
>DroSim_CAF1 8023 106 + 1
AAUAC------------CAAAUUUUAGUAUUAAUUCUUACUCUACAAGUAACCGGUAAAAUAAUGUAGUUCCAAAGAGGAGUUUCUACUCUUGUGGGAAUUAAAUAUUUAUUUACCAC
(((((------------.........))))).....(((((.....)))))..((((((..(((((((((((..(.((((((....)))))).).))))))..)))))..)))))).. ( -20.90)
>consensus
AAUAC____________CAAAUUUUAGUAUUAAUUCUUACUCUACAAGUAACCGGUAAAAUAAUGUAGUUCCAAAGAGGAGUUUGUACUCUUGUGGGAAUUAAAUAUUUAUUUACCAC
.........................((((........))))............((((((..(((((((((((....((((((....))))))...))))))..)))))..)))))).. (-17.83 = -18.17 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:56 2006