| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,591,627 – 10,591,738 |
| Length | 111 |
| Max. P | 0.537556 |
| Location | 10,591,627 – 10,591,738 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.29 |
| Mean single sequence MFE | -40.72 |
| Consensus MFE | -32.78 |
| Energy contribution | -33.03 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537556 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10591627 111 - 22224390 CGCGCAUGAAGCCGUGCUUGUACUUCUUAACCUUGUGCACCUCCAACGCCUGGUAUUCCGGCGUGCAGUUGUGAUGGAUGAUGCCAAUGCCACCACACAGCUGCGCGCGGG--------- ...(((((....)))))..............(((((((.......(((((.((....)))))))(((((((((.(((.((..((....)))))))))))))))))))))))--------- ( -43.20) >DroVir_CAF1 2513 111 - 1 CGCGCAUAAAGCCAUGUUUGUAUUUCUUAACCUUGUGCACCUCCAACGCUUGAUACUCCGGCGUGCAGUUGUGAUGGAUGAUCCCAAUGCCACCACACAGCUGCGCGUUGG--------- .(((((..(((..(((....)))..))).....)))))....((((((((.(.....).)))(((((((((((.(((.((..........)))))))))))))))))))))--------- ( -36.20) >DroPse_CAF1 614 111 - 1 CGCGCAUGAAGCCAUGUUUGUACUUUUUAACCUUGUGCACCUCCAACGCUUGGUACUCCGGCGUGCAGUUGUGAUGGAUGAUGCCGAUGCCACCACACAGCUGCGCGUCGG--------- .(((((((....))))).(((((...........)))))........))........((((((((((((((((.(((.((..((....)))))))))))))))))))))))--------- ( -42.60) >DroGri_CAF1 1917 111 - 1 CACGCAUAAAGCCAUGUUUGUAUUUCUUAACCUUGUGCACCUCCAACGCUUGAUACUCCGGCGUGCAGUUGUGAUGGAUGAUCCCAAUGCCACCACACAGCUGCGCGUGGA--------- (((((.....((((.(((..........)))..)).)).......(((((.(.....).)))))(((((((((.(((.((..........)))))))))))))))))))..--------- ( -34.70) >DroAna_CAF1 1586 120 - 1 CACGCAUGAAGCCGUGCUUGUACUUCUUAACCUUGUGCACCUCCAACGCCUGGUAUUCCGGCGUGCAGUUGUGAUGGAUGAUGCCAAUGCCACCACACAGCUGCACGAGGAUGAUCGUAG ...(((((....))))).(((((...........)))))((((....(((.((....)))))(((((((((((.(((.((..((....)))))))))))))))))))))).......... ( -45.00) >DroPer_CAF1 616 111 - 1 CGCGCAUGAAGCCAUGUUUGUACUUUUUAACCUUGUGCACCUCCAACGCUUGGUACUCCGGCGUGCAGUUGUGAUGGAUGAUGCCGAUGCCACCACACAGCUGCGCGUCGG--------- .(((((((....))))).(((((...........)))))........))........((((((((((((((((.(((.((..((....)))))))))))))))))))))))--------- ( -42.60) >consensus CGCGCAUGAAGCCAUGUUUGUACUUCUUAACCUUGUGCACCUCCAACGCUUGGUACUCCGGCGUGCAGUUGUGAUGGAUGAUGCCAAUGCCACCACACAGCUGCGCGUGGG_________ .(((((((....))))).(((((...........)))))........))........((.(((((((((((((.(((.((..........)))))))))))))))))).))......... (-32.78 = -33.03 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:54 2006