Locus 3995

Sequence ID	X_DroMel_CAF1
Location	10,577,627 – 10,577,731
Length	104
Max. P	0.797766

overview

Window 9

Location	10,577,627 – 10,577,731
Length	104
Sequences	4
Columns	115
Reading direction	forward
Mean pairwise identity	79.70
Mean single sequence MFE	-20.45
Consensus MFE	-19.26
Energy contribution	-19.57
Covariance contribution	0.31
Combinations/Pair	1.06
Mean z-score	-1.14
Structure conservation index	0.94
SVM decision value	0.61
SVM RNA-class probability	0.797766
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10577627 104 + 22224390
UGACUGAUGGGCAGACUCCCCAUCGCCGAGUCAAGGGCAACUGUACACGCGUCGCCCAACAGCCAACCAACU-ACC--------CACCCAC--CCACCGCCACUUUAACCGAAAA
((.(((.(((((.(((((.........)))))..((....))...........))))).))).)).......-...--------.......--...................... ( -22.00)
>DroSim_CAF1 19377 110 + 1
UGACUGAUGGGCAGACUCCCCAUCGCCGAGUCAAGGGCAACUGUACACGA---GCCCUACAGCCAACCGACCAACCCACCAACCCACCCAC--CCAACGCCACUUUAACCGAAAA
((.(((..((((.(((((.........)))))..((....))........---))))..))).))..........................--...................... ( -19.50)
>DroEre_CAF1 17550 89 + 1
UGACUGAUGGGCAGACUCCCCAUCGUUGAGUCAAGGGCAACUGUACACAC---ACCCAACGGCCACCCACC-----------------------CACCGCCACUUUAACCAAAAA
(((((((((((.......))))))....))))).(((....(((....))---))))...(((........-----------------------....))).............. ( -18.30)
>DroYak_CAF1 19109 111 + 1
UGACUGAUGGGCAGACUCCCCAUCGUCGAGUCAAGGGCAACUGUACACGC---GCCCAACAGCCAACCACCCAA-CCACCCACCCAACCACCGCCACCGCCACUUUAACGAAAAA
((.(((.(((((.(((((.........)))))..((....))........---))))).))).)).........-........................................ ( -22.00)
>consensus
UGACUGAUGGGCAGACUCCCCAUCGCCGAGUCAAGGGCAACUGUACACGC___GCCCAACAGCCAACCAACC_A_C________CACCCAC__CCACCGCCACUUUAACCAAAAA
((.(((.(((((.(((((.........)))))..((....))...........))))).))).)).................................................. (-19.26 = -19.57 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:49 2006