| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,577,267 – 10,577,381 |
| Length | 114 |
| Max. P | 0.855458 |
| Location | 10,577,267 – 10,577,381 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.37 |
| Mean single sequence MFE | -26.76 |
| Consensus MFE | -18.08 |
| Energy contribution | -18.00 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.855458 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10577267 114 - 22224390 CUCUUUGCCAUGUGAGGUUUUCUUCUUCU---UUUUUCACACCCCCUCUACUAUUUUUUUAUACCCUGGCGAAGGGUAUUUCAAUAAGUUUUCUAGUUUUGUGGCUAAAAGAG---AUUA (((((((((((((((((............---..)))))).........(((........(((((((.....))))))).......)))...........)))))..))))))---.... ( -25.00) >DroSec_CAF1 17175 117 - 1 CUCUUUGCCAUGUGAGGUUUUCUUCUUCUUGUUUUUCCACACCACCCCUACUACUUUUUUAUACCCUUGCGAAGGGUAUUUCAAUAAGGUUUCCAGUUUUGUGGCCCACAGAG---AUUA .((((((......((((....))))...........(((((..((.......(((((...(((((((.....)))))))......))))).....))..)))))....)))))---)... ( -23.30) >DroSim_CAF1 19004 114 - 1 CUCUUUGCCAUGUGAGGUUUUCUUCUUCU---UUUUCCACACCCCCUCUACUACUUUUUUAUACCCUUGCGAAGGGUAUUUCAAUAAGGUUUCCAGUUUGGUGGCUCAUAGAG---AUUA ((((..((((.(((.((............---....)).)))..((...((((((((...(((((((.....)))))))......)))))....)))..))))))....))))---.... ( -24.59) >DroEre_CAF1 17192 114 - 1 CACUGUGCCAUGUGAGGUUUUCUUCUUCUU---UUGCAACACCCGCUCU---ACUUUUCUGUACCCUUGCGAAGGGUAUUUCAAUAAGGUUUCUAGUUUUGCGACUCAGGAAGAGGAUUA (((........))).((((((((((((...---((((((.((.......---(((((...(((((((.....)))))))......))))).....)).))))))...)))))))))))). ( -29.80) >DroYak_CAF1 18718 113 - 1 CUCUGUGCCAUGUGAGGUUUUCUUCCUCUUCU-UUUUAACACCCCCUCU---ACUUUUCUAUACCCUUGCAGAGGGUGUUUCAAUAAGGUUUUUAGUUUCGUGGCUCACGGAG---AUUA ((((((((((((.((((.......)))).(((-(...(((((((.(((.---................).)).))))))).....))))..........))))))..))))))---.... ( -31.13) >consensus CUCUUUGCCAUGUGAGGUUUUCUUCUUCUU__UUUUCCACACCCCCUCUACUACUUUUUUAUACCCUUGCGAAGGGUAUUUCAAUAAGGUUUCUAGUUUUGUGGCUCACAGAG___AUUA ((((..(((((..((((.......)))).........................(((....(((((((.....)))))))......)))............)))))....))))....... (-18.08 = -18.00 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:48 2006