| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,574,498 – 10,574,604 |
| Length | 106 |
| Max. P | 0.991484 |
| Location | 10,574,498 – 10,574,604 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 70.66 |
| Mean single sequence MFE | -26.67 |
| Consensus MFE | -12.21 |
| Energy contribution | -12.66 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.10 |
| Mean z-score | -3.17 |
| Structure conservation index | 0.46 |
| SVM decision value | 2.27 |
| SVM RNA-class probability | 0.991484 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10574498 106 + 22224390 AAAAAGGGCUUCAUAAUCCAACAAAUCCGGUGUGACCUUAUUAAACA---UUAAAGAGCAAUUUAUGUUUUACUGGUCACACUGGCACAGGAGAAAAUUGAAAUCAACU----------- ......(..((((...(((.......(((((((((((.....(((((---(.(((......)))))))))....)))))))))))....)))......))))..)....----------- ( -29.30) >DroEre_CAF1 14443 105 + 1 AAAAAGGGCAUGCUAA------------AGUAUGACCUUAUUAUACU---CGAAAUUGCAAUUUAUGUUUUACCGGUCACACUGGCACAAGUGGAAUUUAAUAUCAAUUUCCAUGCCAAC ......((((((....------------(((((((.....)))))))---.(((((((....(((.(((((((..(((.....)))....))))))).)))...)))))))))))))... ( -26.00) >DroYak_CAF1 15792 114 + 1 GAAAAGGGCAUGCUAAUCAAAUAAAUGCGGUGUGACCUUAUUAUACAACAAAAAAUUGCAACUUAUGUUUUUCCGGUCACACUGGCACAAGAGAAAUUUAAUAGCAAUUUCCAU------ .....(((..(((((..........((((((((((((...........(((....))).(((....))).....))))))))).)))..(((....)))..)))))...)))..------ ( -24.70) >consensus AAAAAGGGCAUGCUAAUC_AA_AAAU_CGGUGUGACCUUAUUAUACA___AAAAAUUGCAAUUUAUGUUUUACCGGUCACACUGGCACAAGAGAAAUUUAAUAUCAAUUUCCAU______ ...........................((((((((((.....................................)))))))))).................................... (-12.21 = -12.66 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:47 2006