Locus 3991

Sequence ID X_DroMel_CAF1
Location 10,569,376 – 10,569,487
Length 111
Max. P 0.533732
window6564

overview

Window 4

Location 10,569,376 – 10,569,487
Length 111
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 86.98
Mean single sequence MFE -25.32
Consensus MFE -17.96
Energy contribution -19.28
Covariance contribution 1.31
Combinations/Pair 1.12
Mean z-score -1.45
Structure conservation index 0.71
SVM decision value 0.00
SVM RNA-class probability 0.533732
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10569376 111 - 22224390
GCUUGAGCUG--UUGGGCUGUUCUCUUGCCAGAAAAUUAUGCAAGUAAAUACGUUUUUAUGGCCCUAAUAAUGCUGCACAUUUUCUGGAAACAGUAAAAUCAACUAGACAAGA
.((((..(((--((((((((((......(((((((((..(((..(((((......)))))(((.........)))))).))))))))).))))))....))))).)).)))). ( -26.10)
>DroSec_CAF1 9491 112 - 1
ACUUGAGCUGAGUUGGGCUGUUCAUUUGCCAGAAAAUUAUGCUAGUAAAUAAAU-UUUAUGGCCCUAAUAAUGCUGCACAUUUUCUGGAAACAGUAAAAUCAACUAGACGAGA
.((((..((.((((((((((((......(((((((((..(((..(((((.....-)))))(((.........)))))).))))))))).))))))....)))))))).)))). ( -26.70)
>DroSim_CAF1 8866 113 - 1
ACUUGAGCUGAGUUGGGCUGCUCUCUUGCCAUAAAAUUAUGCAAGUAAAUACAUUUUUAUGGCCCUAAUAAAGCUGCACAUUUUCUGGAAACAGUAAAAUCAACUAGACGAGA
.((((..((.(((((((((........(((((((((.(((........)))...)))))))))........))))....((((((((....))).)))))))))))).)))). ( -29.09)
>DroEre_CAF1 9475 110 - 1
GCUUGCGCUU--UAGGGCUGUUCUCUGGCCAGCAAAUUUUGUAAAUAAAAACAUUUUUUUGGCCCUAAUAAUGCUGCACAUUUUUUGAAA-CAUUAAAGUCAACUAGACAAGA
((..(((..(--((((((.((......))...((((...(((........)))....)))))))))))...))).)).............-.......(((.....))).... ( -19.40)
>consensus
ACUUGAGCUG__UUGGGCUGUUCUCUUGCCAGAAAAUUAUGCAAGUAAAUACAUUUUUAUGGCCCUAAUAAUGCUGCACAUUUUCUGGAAACAGUAAAAUCAACUAGACAAGA
.(((((((...((((((..........(((((((((.(((........)))...)))))))))))))))...)))....((((((((....))).)))))........)))). (-17.96 = -19.28 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:44 2006