Locus 3988

Sequence ID X_DroMel_CAF1
Location 10,563,528 – 10,563,626
Length 98
Max. P 0.985639
window6560

overview

Window 0

Location 10,563,528 – 10,563,626
Length 98
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 94.25
Mean single sequence MFE -27.30
Consensus MFE -24.48
Energy contribution -24.22
Covariance contribution -0.25
Combinations/Pair 1.04
Mean z-score -2.92
Structure conservation index 0.90
SVM decision value 2.01
SVM RNA-class probability 0.985639
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10563528 98 + 22224390
UGACACAGUGACCCAAUAAUAUUCAAAUGAAGUCAGCGACAAAAGCUCGCUUCAGUUUCAGUUUUUAGCCGAAAGUUAAAUGAACUGA-----ACUGUGGAUG--
...((((((..................((((((.(((.......))).))))))...(((((((((((.(....)))))..)))))))-----))))))....-- ( -27.90)
>DroSec_CAF1 3679 98 + 1
UGACACAGUGACCCAAUAAUAUUCAAAUGAAGUCAGCGACAAAAGCUCGCUUCAGUUUCAGUUUUUAGUCGUAAGUUAAAUGAACUGA-----ACUGUGAAUG--
...((((((..................((((((.(((.......))).))))))...(((((((((((.(....)))))..)))))))-----))))))....-- ( -26.70)
>DroSim_CAF1 3680 98 + 1
UGACACAGUGACCCAAUAAUAUUCAAAUGAAGUCAGCGACAAAAGCUCGCUUCAGUUUCAGUUUUUAGUCGUAAGUUAAAUGAACUGA-----ACUGUGAAUG--
...((((((..................((((((.(((.......))).))))))...(((((((((((.(....)))))..)))))))-----))))))....-- ( -26.70)
>DroEre_CAF1 3634 105 + 1
UGACACAGUGACCCAAUAAUAUUCAAAUGAAGUCAGCGACAAAAGCUCGCUUCAGUUUCAGUUUUUAGCCGUAUGUUAAAUGAACUGAACUGAACUGUGGAUGGA
...((((((..................((((((.(((.......))).))))))..(((((((((((((.....)))))..))))))))....))))))...... ( -27.90)
>consensus
UGACACAGUGACCCAAUAAUAUUCAAAUGAAGUCAGCGACAAAAGCUCGCUUCAGUUUCAGUUUUUAGCCGUAAGUUAAAUGAACUGA_____ACUGUGAAUG__
...((((((..................((((((.(((.......))).))))))...((((((((((((.....)))))..))))))).....))))))...... (-24.48 = -24.22 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:41 2006