Locus 3984

Sequence ID X_DroMel_CAF1
Location 10,544,434 – 10,544,543
Length 109
Max. P 0.935009
window6551

overview

Window 1

Location 10,544,434 – 10,544,543
Length 109
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 86.28
Mean single sequence MFE -27.42
Consensus MFE -23.03
Energy contribution -23.20
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -2.65
Structure conservation index 0.84
SVM decision value 1.24
SVM RNA-class probability 0.935009
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10544434 109 + 22224390
CUU----AUAUUACUCUAA----UGUU--ACUCUUAUUGCUUA-CUUGCAGUUUAUUGGCAACAAUAAUGGUCAGCACAACAUUGACAACACUGGCUGCUGGACAAACAACUAGUAGCAG
...----............----((((--(((...(((((...-...)))))((((((....))))))((..(((((...((.((....)).))..)))))..)).......))))))). ( -26.00)
>DroSec_CAF1 70797 109 + 1
CUU----UUAUUACACUAA----UGUU--ACUCUUACUGCUUA-CUUGCAGUUUAUUGGCAACAAUAAUGGUCAGCACAACAUUGACAACACUGGCAGCUGGACAAACAACUAGUAGCAG
...----............----((((--(((...(((((...-...)))))((((((....))))))((..((((....((.((....)).))...))))..)).......))))))). ( -26.50)
>DroSim_CAF1 74811 109 + 1
CUU----UUAUUACACUAA----UGCU--ACUCUUACUGCUUA-CUUGCAGUUUAUUGGCAACAAUAAUGGUCAGCACAACAUUGACAACACUGGCUGCUGGACAAACAACUAGUAGCAG
...----............----((((--(((...(((((...-...)))))((((((....))))))((..(((((...((.((....)).))..)))))..)).......))))))). ( -30.70)
>DroEre_CAF1 71740 104 + 1
------GAUAUUAUUCUAA----UGUU--CCUC---CUGUUUG-CUUGCAGUUUAUUGGCAACAAUAAUGGUCAGCACAACAUUGACAACACUGGCUGCUGGACAAACAACUAGUAGCAG
------.............----((((--....---.((((((-((.((...((((((....))))))..)).)))).)))).....))))...((((((((........)))))))).. ( -28.10)
>DroYak_CAF1 74142 112 + 1
CUUAUAGAUAUUCGUCUAA----UGUUUUACUC---CUGUUUA-CUUGCAGUUUAUUGGCAACAAUAAUGGUCAGCACAACAUUGACAACACUGGCUGCUGGACAAACAACUAGUAGCAG
.............(((.((----((((......---((((...-...)))).((((((....))))))..........))))))))).......((((((((........)))))))).. ( -27.70)
>DroAna_CAF1 76437 110 + 1
CAA----A----AUCCUAAAUCUUGUU--UCUUGUGUCUUUUAUUUUCCAGUUUAUUGGCAACAAUAAUGGUCAGCACAACAUUGACAACACUGGCUGCUGGACAAACAACUAGUAGCAG
...----.----..........(((((--..((((((..........(((..((((((....)))))))))...))))))....))))).....((((((((........)))))))).. ( -25.52)
>consensus
CUU____AUAUUACUCUAA____UGUU__ACUCUUACUGCUUA_CUUGCAGUUUAUUGGCAACAAUAAUGGUCAGCACAACAUUGACAACACUGGCUGCUGGACAAACAACUAGUAGCAG
................................................((((((((((....))))))..(((((.......)))))...))))((((((((........)))))))).. (-23.03 = -23.20 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:33 2006