Locus 3983

Sequence ID X_DroMel_CAF1
Location 10,544,246 – 10,544,366
Length 120
Max. P 0.832267
window6550

overview

Window 0

Location 10,544,246 – 10,544,366
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.00
Mean single sequence MFE -38.14
Consensus MFE -36.16
Energy contribution -36.32
Covariance contribution 0.16
Combinations/Pair 1.03
Mean z-score -1.25
Structure conservation index 0.95
SVM decision value 0.72
SVM RNA-class probability 0.832267
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10544246 120 - 22224390
UAUGUCCACCAUGGUUCACGUCCUGCUGGCAGUUGUUUUAAUAAAUGCAGGCACAAUGUCAACCUUUGUCAUGUCCAAGUGGCAACAGGGCGUGACAGUAACGAGUUCUGUCGCCGUCGC
...((((.....((((.((((..((((.(((.((((....)))).))).))))..)))).)))).(((((((......)))))))..))))(((((((.((....)))))))))...... ( -38.80)
>DroSec_CAF1 70608 120 - 1
UAUGUCCACCAUGGUUCACGUCCUGCUGGCAGUUGUUUUAAUAAAUGCAGGCACAAUGUCAACCUUUGUCAUGUCCAAGUGGCAACAGGGCGUGACAGUAACGAGUUCUGUCGCCGUCGC
...((((.....((((.((((..((((.(((.((((....)))).))).))))..)))).)))).(((((((......)))))))..))))(((((((.((....)))))))))...... ( -38.80)
>DroSim_CAF1 74622 120 - 1
UAUGUCCACCAUGGUUCACGUCCUGCUGGCAGUUGUUUUAAUAAAUGCAGGCACAAUGUCAACCUUUGUCAUGUCCAAGUGGCAACAGGGCGUGACAGUAACGAGUUCUGUCGCCGUCGC
...((((.....((((.((((..((((.(((.((((....)))).))).))))..)))).)))).(((((((......)))))))..))))(((((((.((....)))))))))...... ( -38.80)
>DroEre_CAF1 71580 120 - 1
AGAGUCCGCCAAGGCUCACGUCCUGCUGGCAGUUGUUUUAAUAAAUGCAGGCACAAUGUCAACCUUUGUCAUGUCCAAGUGGCAACAGGGCAUGACAGUAACGAGUUCUGCCGCCGUCGC
.((...((.((..((((((((..((((.(((.((((....)))).))).))))..))))......(((((((((((...((....)))))))))))))....))))..)).))...)).. ( -39.40)
>DroYak_CAF1 73973 120 - 1
AAUGUCCAACAUGGUUCACGUCCUGCUGGCAGUUGUUUUAAUAAAUGCAGGCACCCUGUCAACCUUUGUCAUGUCCAAGUGGCAACAGGGCAUGACAGUAACGAGUUCUGUCGCCGUCGC
............((((.(((...((((.(((.((((....)))).))).))))...))).))))..((((((((((...((....))))))))))))(..(((.((......)))))..) ( -34.90)
>consensus
UAUGUCCACCAUGGUUCACGUCCUGCUGGCAGUUGUUUUAAUAAAUGCAGGCACAAUGUCAACCUUUGUCAUGUCCAAGUGGCAACAGGGCGUGACAGUAACGAGUUCUGUCGCCGUCGC
............((((.((((..((((.(((.((((....)))).))).))))..)))).))))..((((((((((...((....))))))))))))(..(((.((......)))))..) (-36.16 = -36.32 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:32 2006