Locus 3981

Sequence ID	X_DroMel_CAF1
Location	10,543,210 – 10,543,323
Length	113
Max. P	0.568010

overview

Window 8

Location	10,543,210 – 10,543,323
Length	113
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	82.82
Mean single sequence MFE	-21.75
Consensus MFE	-16.04
Energy contribution	-17.85
Covariance contribution	1.81
Combinations/Pair	1.21
Mean z-score	-1.53
Structure conservation index	0.74
SVM decision value	0.07
SVM RNA-class probability	0.568010
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10543210 113 - 22224390
AGCGGGAGCCACAAGCGAAACGGGGGAAAAAAGUCAGAGAAGCGUAGAAAUAUACACAGAAAA-UAGGGGGAUGCGUUUAAAGAAUUCAAAGUUUUGCUUGUGAUA-AUAAUAUC
.((....))((((((((((((....(((.....((....(((((((....(((.........)-))......)))))))...)).)))...))))))))))))...-........ ( -25.70)
>DroSec_CAF1 69615 115 - 1
AGCAGGAGCCACAAGCGAAACGGGGAAAAAAAGUCAGAGAAGCGUAGAAAUAUGCACAGAAAAAAAAGGGGAUGCAGUUGAAGAUCUCAAUGUUGUACUUGUGAUAAAUAAAAUC
.((....))((((((...((((...................(((((....))))).............(((((..........)))))..))))...))))))............ ( -19.90)
>DroSim_CAF1 73583 114 - 1
AGCAGGAGCCACAAGCGAAACGGGGAAAAAAAGUCAGAGAAGCGUAGAAAUAUGCACAGAAAA-AAAGGGGAUGCAGUUAAAGAUCUCAAUGUUGUACUUGUGAUAAAUAAAAUC
.((....))((((((...((((...................(((((....)))))........-....(((((..........)))))..))))...))))))............ ( -19.90)
>DroEre_CAF1 70566 110 - 1
AGCAGGAGCCACAAGCGAAACGAG-AAA-AAAGUCAGAGAAGCGUAGAAAUGCACGCAGAGAA-AACGGGCUUACUUUGUGAUAAUGUAAUUUUUUGCUUGUC-UAAAUA-UAUC
.((....)).((((((((((....-...-.....((((((((((((....))).((.......-..)).)))).))))).............)))))))))).-......-.... ( -21.51)
>consensus
AGCAGGAGCCACAAGCGAAACGGGGAAAAAAAGUCAGAGAAGCGUAGAAAUAUACACAGAAAA_AAAGGGGAUGCAGUUAAAGAACUCAAUGUUGUACUUGUGAUAAAUAAAAUC
.((....))((((((((((((....................(((((....))))).............(((((..........)))))...))))))))))))............ (-16.04 = -17.85 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:30 2006