Locus 3974

Sequence ID X_DroMel_CAF1
Location 10,537,465 – 10,537,566
Length 101
Max. P 0.551890
window6535

overview

Window 5

Location 10,537,465 – 10,537,566
Length 101
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 90.55
Mean single sequence MFE -28.58
Consensus MFE -24.54
Energy contribution -24.02
Covariance contribution -0.52
Combinations/Pair 1.15
Mean z-score -1.26
Structure conservation index 0.86
SVM decision value 0.04
SVM RNA-class probability 0.551890
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10537465 101 - 22224390
---------ACAACAUUUCUGGUUGUUUUUCGAGGGUAAUAAAACGUUUCGAAUUAACGUUUUGUUGCUAGACAAUUGGGACACAA-AGGGAACGACGUGCGGGUU--UGGCU
---------.(((...(((..(((((((......((((((((((((((.......)))))))))))))))))))))..)))(((..-.(....)...))).....)--))... ( -26.80)
>DroSec_CAF1 63905 101 - 1
---------ACAACAUUUCUGGUUGUUUUUCGAGGGUAAUAAAACGUUUCGAAUUAACGUUUUGUUGCUAGACAAUUGGGACACAA-AGGGAUCGACGUGUGGGUU--UGGCU
---------.(((...(((..(((((((......((((((((((((((.......)))))))))))))))))))))..)))((((.-..(......).))))...)--))... ( -27.10)
>DroSim_CAF1 67726 101 - 1
---------ACAACAUUUCUGGUUGUUUUUCGAGGGUAAUAAAACGUUUCGAAUUAACGUUUUGUUGCUAGACAAUUGGGACACAA-AGGGAUCGACGUGCGGGUU--UGGCU
---------.......(((..(((((((......((((((((((((((.......)))))))))))))))))))))..)))..(((-(....(((.....))).))--))... ( -25.50)
>DroEre_CAF1 65389 101 - 1
---------ACAACAUUUCUGCUUGUUUUCCGAGGGUAAUAAAACGUUUCGAAUUAACGUUUUGUUGCUAGACAAUUGGGGCACAA-AGGGAUCGACGUGCGGCGC--UGGCU
---------....((...((((.((((((((...((((((((((((((.......))))))))))))))......(((.....)))-.))))..)))).))))...--))... ( -26.70)
>DroYak_CAF1 66237 113 - 1
UCAGCAUUUUCAACAUUUCUGCUUGUUUUCCGAGGGCAAUAAAACGUUUCGAAUUAACGUUUUGUUGCCAGACAAUUGGGACACAAAAGGGAUCGACGUGCGGGGCUUUGGCU
...((((..((...((..((..((((.((((((.((((((((((((((.......))))))))))))))......)))))).)))).))..)).)).))))..(((....))) ( -36.80)
>consensus
_________ACAACAUUUCUGGUUGUUUUUCGAGGGUAAUAAAACGUUUCGAAUUAACGUUUUGUUGCUAGACAAUUGGGACACAA_AGGGAUCGACGUGCGGGUU__UGGCU
..............((..((...(((.((((((.((((((((((((((.......))))))))))))))......)))))).)))..))..)).................... (-24.54 = -24.02 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:18 2006