Locus 3970

Sequence ID X_DroMel_CAF1
Location 10,526,928 – 10,527,040
Length 112
Max. P 0.651852
window6528

overview

Window 8

Location 10,526,928 – 10,527,040
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 74.58
Mean single sequence MFE -24.22
Consensus MFE -6.90
Energy contribution -8.10
Covariance contribution 1.20
Combinations/Pair 1.39
Mean z-score -1.74
Structure conservation index 0.28
SVM decision value 0.25
SVM RNA-class probability 0.651852
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10526928 112 + 22224390
------GGUCUUAAUUUACUUAAUUGACACUGCUGUCCACCUCCAUUUUGUAAUCAGAAAUAAAG--CUAUACGAACUGCAGAGGAGGGAGACUUUUUCAUGUAUGUAAACUCAUUCAAU
------(((.((((((.....)))))).)))...(((..(((((.(((((....))))).....(--(..........))...)))))..))).......((.(((......))).)).. ( -21.20)
>DroSec_CAF1 58054 118 + 1
CUUUGUUUUCCUAAUUUACUUAAUUGACACUGCUGUCCCCCUCUAUUUUGUAAUCAGAAAUAAAG--CUAUAAGAACAGCAGAGGAGGGAGACUUUUUCAUUUAUAUAAACUCAUUCAAC
....((((((((.............((((....))))..(((((.(((((....))))).....(--((........))))))))))))))))........................... ( -22.30)
>DroSim_CAF1 61746 118 + 1
CUUUGUUUUCUUAAUUUACUUAAUUGACACUGCUCUUCCCCUCUAUUUUGUAAUCAGAAAUAAAG--CUAUAAGAACAGCAGAGGAGGGAGACUUUUUCAUUUAUAUAAACUCAUUCAAU
..............((((..(((.(((....(.(((((((((((.(((((....))))).....(--((........)))))))).)))))))....))).)))..)))).......... ( -23.00)
>DroEre_CAF1 59993 120 + 1
CUUUGUUUUCUUAAUUUAGCUAAUUGAUUUCGCUCACCCCCUCAGUUUUGUAAACAGAAACUCAGUUCAGUAGAAACUGCAGAGGAGGGGGAAUCUAGCUUUUAUGAAAACUCCUUCAAG
....((((((.(((...(((((..(((......)))(((((((..(((((....))))).(((....((((....))))..))))))))))....))))).))).))))))......... ( -33.90)
>DroYak_CAF1 60629 106 + 1
CUUUGUUUUCUGAUUUUACCUAAUCGCCUUUACUGUGCGUCUGAAUUUUGCAAUCAGAAAUAAAG--CAAUAAGAAUUGCUGAGUUGGGAGACU------UUU------UCUCUUUUAAU
....((((((..((((........((((......).)))(((((.........))))).....((--((((....))))))))))..)))))).------...------........... ( -20.70)
>consensus
CUUUGUUUUCUUAAUUUACUUAAUUGACACUGCUGUCCCCCUCAAUUUUGUAAUCAGAAAUAAAG__CUAUAAGAACUGCAGAGGAGGGAGACUUUUUCAUUUAUAUAAACUCAUUCAAU
..................................(((.((((((..((((((.......(((......)))......)))))))))))).)))........................... ( -6.90 =  -8.10 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:12 2006