Locus 3966

Sequence ID X_DroMel_CAF1
Location 10,523,118 – 10,523,216
Length 98
Max. P 0.500000
window6520

overview

Window 0

Location 10,523,118 – 10,523,216
Length 98
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 91.14
Mean single sequence MFE -17.12
Consensus MFE -14.07
Energy contribution -14.82
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.39
Structure conservation index 0.82
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10523118 98 - 22224390
CCAUUCCCCCGCAGUCCAUCUCUGACCUCAAAACUAAAUCGAAACUUGCAGUUGCAGGACAAUCUCGGCGUUAUCCUUCCGCUGUUGUUCC--UUCCUCU
.............((((.....((....))................(((....)))))))(((..(((((.........)))))..)))..--....... ( -13.60)
>DroSec_CAF1 54490 100 - 1
CCAUUCCCCCACAGUCCAUCUCUGACCUCAAAACUAAAUCGAAACUUGCAGUGGCAGGACAAUCUCGGCGUUAUCCUUCCGCUGUUGUUCCUCUUCCUCU
...........(((.......)))................(((....(((((((.((((.(((......))).)))).)))))))..))).......... ( -19.10)
>DroSim_CAF1 58103 100 - 1
CCAUUCCCCCACAGUCCAUCUCUGACCUCAAAACUAAAUCGAAACUUGCAGUGGCAGGACAAUCUCGGCGUUAUCCUUCCUCUGUUGUUCCUCUUCCUCU
...........(((.......)))................(((....((((.((.((((.(((......))).)))).)).))))..))).......... ( -15.50)
>DroEre_CAF1 56464 92 - 1
----UUCCAG--UGUCCAUCUCUGACCUCAAAACUAAAUCGAAACUUGCAGUUGCAGGACAAUCUCGCCGUUAUCCUGCCGCUGUUGUUCC--UUCCUCU
----...(((--.(.....).)))................(((....(((((.((((((.(((......))).)))))).)))))..))).--....... ( -20.30)
>consensus
CCAUUCCCCCACAGUCCAUCUCUGACCUCAAAACUAAAUCGAAACUUGCAGUGGCAGGACAAUCUCGGCGUUAUCCUUCCGCUGUUGUUCC__UUCCUCU
.............(((.......)))..............(((....(((((((.((((.(((......))).)))).)))))))..))).......... (-14.07 = -14.82 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:13:05 2006