| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,516,556 – 10,516,653 |
| Length | 97 |
| Max. P | 0.919942 |
| Location | 10,516,556 – 10,516,653 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.57 |
| Mean single sequence MFE | -27.43 |
| Consensus MFE | -20.82 |
| Energy contribution | -21.57 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.76 |
| SVM decision value | 1.13 |
| SVM RNA-class probability | 0.919942 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10516556 97 + 22224390 ----------G---GGCAGCAACAAUUCAACUCUUGAGUUGCAAC-------UUGCAACACGCUCGCUAAGCGGCUG---CAUUAAAAGGCCACUCAAACACACAGCGCGGCGCCAAAAA ----------(---((((((.................(((((...-------..))))).((((.....))))))))---)........(((.(.(.........).).))).))..... ( -26.60) >DroSec_CAF1 48158 97 + 1 ----------G---GGCAGCAACAAUUCAACUCUCGAGUUGCAAC-------UUGCAACACGCUCGCUAAGCGGCUG---UAUUAAAAGGCCACUCAAACACACAGCGAGGCGCCUAAAA ----------(---(((.((..............((.(((((...-------..))))).))((((((.((.((((.---........)))).)).........)))))))))))).... ( -28.10) >DroSim_CAF1 51648 97 + 1 ----------G---GGCAGCAACAAUUCAACUCUCGAGUUGCAAC-------UUGCAACACGCUCGCUAAGCGGCUG---CAUUAAAAGGCCACUCAAACACACAGCGAGGCGCCUAAAA ----------.---.(((((.................(((((...-------..))))).((((.....))))))))---)......((((..(((...........)))..)))).... ( -28.80) >DroEre_CAF1 50141 97 + 1 ----------G---GGCAGAAACAAUUCAACUCUCGAGUUGCAAC-------UUGCAACACGCUCGCUAAGCGGCUG---CAUUAAAAGGCCACUCAAACACACAGCGAGGCGCCAAAAA ----------.---(((.................((.(((((...-------..))))).))((((((.((.((((.---........)))).)).........))))))..)))..... ( -25.80) >DroYak_CAF1 49617 117 + 1 CACUAACAAUGGGCGGCAGCAACAAUUCAACUCUCGAGUUGCAACUUGCAACUUGCAACACGCUCGCUAAGCGGCUG---CAUUAAAAGGCCACUCAAACACACAGCGAGGCGCCAAAAA ...........(((((((((..............((((((((.....)))))))).....((((.....))))))))---)............(((...........))).))))..... ( -33.10) >DroAna_CAF1 53633 82 + 1 -----------------AACAACAACUCGAG--AUGUGUUGCAAG--------UGCAACG--CGAGCUAAGCGGCUGCCACAUUAAAAGGCCACUC---------GUUGGGCGCCAAAAU -----------------..............--.((((((((...--------.))))))--)).(((.(((((..(((.........)))...))---------))).)))........ ( -22.20) >consensus __________G___GGCAGCAACAAUUCAACUCUCGAGUUGCAAC_______UUGCAACACGCUCGCUAAGCGGCUG___CAUUAAAAGGCCACUCAAACACACAGCGAGGCGCCAAAAA ..............(((....................(((((((........)))))))...((((((.((.((((............)))).)).........))))))..)))..... (-20.82 = -21.57 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:42 2006