Locus 3953

Sequence ID X_DroMel_CAF1
Location 10,512,923 – 10,513,027
Length 104
Max. P 0.882728
window6490

overview

Window 0

Location 10,512,923 – 10,513,027
Length 104
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 92.44
Mean single sequence MFE -35.76
Consensus MFE -31.62
Energy contribution -31.98
Covariance contribution 0.36
Combinations/Pair 1.03
Mean z-score -1.45
Structure conservation index 0.88
SVM decision value 0.92
SVM RNA-class probability 0.882728
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10512923 104 - 22224390
GUCUCGUGUUUGUUGCUGCGGCGGGAAGGCCAUAAUAGUUACUGGGAU-------UCCGGCACAAUACGCCGAACACUUUUGGAUCUCCAAA----CCAGCAGCCUUGAGCACUC
.....(((((((..((((((((......)))...........(((...-------..((((.......))))......(((((....)))))----))))))))..))))))).. ( -35.10)
>DroSec_CAF1 44270 104 - 1
GUCUCGUGUUUGUUGCUGCGGCGGGAAGGCCAUAAUAGUUACUGGGAU-------UCCGGCACAACACGCCGAACACUUUUGGAUCUCCAAA----CCAGCAGCCUUGAGCACUC
.....(((((((..(((((((((((((..(((..........)))..)-------)))(......).)))).......(((((....)))))----...)))))..))))))).. ( -35.40)
>DroSim_CAF1 47617 104 - 1
GUCUCGUGUUUGUUGCUGCGGCGGGAAGGCCAUAAUAGUUACUGGGAU-------UCCGGCACAACACGCCGAACACUUUUGGAUCUCCAAA----CCAGCAGCCUUGAGCACUC
.....(((((((..(((((((((((((..(((..........)))..)-------)))(......).)))).......(((((....)))))----...)))))..))))))).. ( -35.40)
>DroEre_CAF1 44984 104 - 1
GUCUAGUGUUUGUUGCUGCGGCGGGAAGGACAUAAUAGUUACUGGGAU-------UCCGGCACAACACGCCGAACACUUUUGGAUCUCCAAG----CCAGCAGCCUUGAGCACUC
....((((((((..((((((((......(((......)))..((((((-------((((((.......)))).........))))).))).)----)).)))))..)))))))). ( -34.60)
>DroYak_CAF1 46004 115 - 1
GUCUCGUGUUUGUUGCUGCGGCGGAAAGGCCAUAAUAGUUGCUUGGAUUCCGGAUUCCGGCACAACACACCGAACAUUUUUGGAUCUCCAAGUGCUCCAGCAGCCUUGAGCACUC
.....(((((((..((((((((......))).........(((((((..((((...)))).........(((((....)))))...)))))))......)))))..))))))).. ( -38.30)
>consensus
GUCUCGUGUUUGUUGCUGCGGCGGGAAGGCCAUAAUAGUUACUGGGAU_______UCCGGCACAACACGCCGAACACUUUUGGAUCUCCAAA____CCAGCAGCCUUGAGCACUC
.....(((((((..(((((((((.....(((....(((...)))(((........))))))......)))).......(((((....))))).......)))))..))))))).. (-31.62 = -31.98 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:36 2006