| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,512,759 – 10,512,873 |
| Length | 114 |
| Max. P | 0.890478 |
| Location | 10,512,759 – 10,512,873 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 90.42 |
| Mean single sequence MFE | -28.01 |
| Consensus MFE | -23.15 |
| Energy contribution | -24.55 |
| Covariance contribution | 1.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.890478 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10512759 114 - 22224390 AUUUAAAAUGCCAUAAAUUAAGAGACAACAACUGACGAUGGCGCCGAUGCCGAGAUAGAGAGAG--AGGUGGGUUGGUUGGGGCCAUUGCAGUUUUCACUAUUAAAAUGCAUUAA-A ......(((((......((((.((.....(((((.(((((((.((((((((.(..(........--)..).)))..))))).))))))))))))....)).))))...)))))..-. ( -29.10) >DroSec_CAF1 44112 108 - 1 AUUUAAAAUGCCAUAAAUUAAGAGACAACAACUGACGAUGGCGCCGAUGCCGAGAUAGGGAGAG--------AGGGGUUAAGGCCAUUGCAGUUUCCACUAUUAAAAUGCAUUAA-A ......(((((......((((.((.....(((((.(((((((...(((.((.............--------.)).)))...))))))))))))....)).))))...)))))..-. ( -22.44) >DroSim_CAF1 47451 116 - 1 AUUUAAAAUGCCAUAAAUUAAGAGACAACAACUGACGAUGGCGCCGAUGCCGAGAUAGAGAGAGAGAGGGGGAGGGGUUAAGGCCAUUGCAGUUUCCACUAUUAAAAUGCAUUAA-A ......(((((......((((.((.....(((((.((((((((((..(.((..................)).)..)))....))))))))))))....)).))))...)))))..-. ( -22.77) >DroEre_CAF1 44806 114 - 1 AUUUAAAAUGCCAUAAAUUAAGAGACAACAACUGACGAUGGCGCCGAUGCCGAGAUAGAGGUAG--AGUGGUUGGGGUUGGGGCCAUUGCAGUUUCCACUAUUAAAAUGCAUUUA-A .....((((((......((((.((.....(((((.(((((((.(((((.((((...........--.....)))).))))).))))))))))))....)).))))...)))))).-. ( -32.99) >DroYak_CAF1 45817 109 - 1 AUUUAAAAUGCCAUAAAUUAAGAGACAACAACUGACGAUGGCGCCGAUGCCGAGAUAAAGAGAG--AG------GUGUUGGGGCCAUUGCAGUUUCCACUAUUAAAAUGCAUUAAAA ......(((((......((((.((.....(((((.(((((((.((((((((.............--.)------))))))).))))))))))))....)).))))...))))).... ( -32.74) >consensus AUUUAAAAUGCCAUAAAUUAAGAGACAACAACUGACGAUGGCGCCGAUGCCGAGAUAGAGAGAG__AG__G_AGGGGUUGGGGCCAUUGCAGUUUCCACUAUUAAAAUGCAUUAA_A ......(((((......((((.((.....(((((.(((((((.(((((.((......................)).))))).))))))))))))....)).))))...))))).... (-23.15 = -24.55 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:35 2006