Locus 3951

Sequence ID X_DroMel_CAF1
Location 10,512,570 – 10,512,660
Length 90
Max. P 0.644932
window6488

overview

Window 8

Location 10,512,570 – 10,512,660
Length 90
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 86.14
Mean single sequence MFE -23.51
Consensus MFE -15.66
Energy contribution -15.66
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.80
Structure conservation index 0.67
SVM decision value 0.23
SVM RNA-class probability 0.644932
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10512570 90 + 22224390
UAGCAGAGGGGGUUG----GAAGUGGUAAAGUUGACCU--CCCAGCUCUUUGUGCUUAUU----------------UUUUCAAAUUUAUUUUUUUAAUGCAUGCAUUCAAGC
.((((.(((((((((----(....(((.......))).--.)))))))))).))))....----------------...............(((.((((....)))).))). ( -21.90)
>DroSec_CAF1 43934 90 + 1
UAGCAAAGGGGGUUG----GGAGUGGUAAAGUCGACCU--CCCAGCUCUUUGUGCUUAUU----------------UUUUCAAAUUUAUUUUUUUAAUGCAUGCAUUCAAGC
.((((.(((((((((----(((((.(......).).))--))))))))))).))))....----------------...............(((.((((....)))).))). ( -25.20)
>DroSim_CAF1 47271 90 + 1
UAGCAAAGGGGGUUG----GGAGUGGUAAAGUCGACCU--CCCAGCUCUUUGUGCUUAUU----------------UUUUCAAAUUUAUUUUUUUAAUGCAUGCAUUCAAGC
.((((.(((((((((----(((((.(......).).))--))))))))))).))))....----------------...............(((.((((....)))).))). ( -25.20)
>DroYak_CAF1 45605 112 + 1
UAGCAGAGGGGGUUGCUUGCUAGUGGUAAAGUCGACCUUCCCCAGCUCUUUGUGCUUAUUUUUGCAUUUUUUCAUUUUUUCAAAUUUAUUUUUUUAAUGCAUGCAUUUAAGC
..((((((((((((((((((.....)).))).)))))........))))))))(((((....((((((...........................))))))......))))) ( -21.73)
>consensus
UAGCAAAGGGGGUUG____GGAGUGGUAAAGUCGACCU__CCCAGCUCUUUGUGCUUAUU________________UUUUCAAAUUUAUUUUUUUAAUGCAUGCAUUCAAGC
.((((.(((((((((.........(((.......))).....))))))))).))))...................................(((.((((....)))).))). (-15.66 = -15.66 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:34 2006