Locus 3947

Sequence ID X_DroMel_CAF1
Location 10,502,862 – 10,502,957
Length 95
Max. P 0.688979
window6481

overview

Window 1

Location 10,502,862 – 10,502,957
Length 95
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 90.15
Mean single sequence MFE -24.90
Consensus MFE -21.70
Energy contribution -21.82
Covariance contribution 0.12
Combinations/Pair 1.17
Mean z-score -1.35
Structure conservation index 0.87
SVM decision value 0.32
SVM RNA-class probability 0.688979
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10502862 95 - 22224390
UUCUAGGUGGAAAAACAGGGCGGUGAGUAUUGUCAGGUAGCUUAGGUGCAUGAUUUCAAUGACUGA-UUUACUUUGUUCAUGUUUUUCAACCAAGU
.....(((.(((((((((((((..(((((..(((((...((......)).((....))....))))-).)))))))))).)))))))).))).... ( -27.50)
>DroSec_CAF1 33858 95 - 1
CUCUAGGUGGAAAAACAGGGCGGUGAGUAUUGUCAGGUAGCUUAAGUGCAUGAUUUCAAUGACUGA-UUUACUUUGUUCAUGUUUUUCAAUCAAGU
.....(((.(((((((((((((..(((((..(((((...((......)).((....))....))))-).)))))))))).)))))))).))).... ( -24.90)
>DroSim_CAF1 34321 95 - 1
CUCUAGGUGGAAAAACAGGGCGGUGAGUAUUGUCAGGUAGCUUAAGUGCAUGAUUUCAAUGACUGA-UUUACUUUGUUCAUGUUUUUCAAUCAAGU
.....(((.(((((((((((((..(((((..(((((...((......)).((....))....))))-).)))))))))).)))))))).))).... ( -24.90)
>DroEre_CAF1 35698 95 - 1
UGGUAGGUGGAAAAACAGGGCGGUGAGUAUUGCCAGGUAGCUCAGUUGCAUGAUUUCAAGGACUGA-UUUACUUUGUUUAUGUUUCUCAGCCGAGU
.....(((.((.(((((.((((((....))))))((((((.((((((.(.((....)).)))))))-.))))))......))))).)).))).... ( -26.00)
>DroYak_CAF1 37066 96 - 1
UUGUGGGUGGAAAAACAGGGCGGUGAGUAUUGGCAGGUAGCUCAAGUGCAUGAUUUCGAAGACUGACUUUACUUUGCUUAGGUUUUUCAAGCGAGU
((((...(((((((.(..((((..(((((..(.(((...((......)).((....))....))).)..)))))))))..).))))))).)))).. ( -21.20)
>consensus
UUCUAGGUGGAAAAACAGGGCGGUGAGUAUUGUCAGGUAGCUUAAGUGCAUGAUUUCAAUGACUGA_UUUACUUUGUUCAUGUUUUUCAACCAAGU
.....(((.(((((((((((((..(((((...((((...((......)).((....))....))))...)))))))))).)))))))).))).... (-21.70 = -21.82 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:28 2006