Locus 3946

Sequence ID	X_DroMel_CAF1
Location	10,501,967 – 10,502,060
Length	93
Max. P	0.738876

overview

Window 0

Location	10,501,967 – 10,502,060
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	99.57
Mean single sequence MFE	-24.12
Consensus MFE	-23.80
Energy contribution	-23.80
Covariance contribution	0.00
Combinations/Pair	1.00
Mean z-score	-1.35
Structure conservation index	0.99
SVM decision value	0.44
SVM RNA-class probability	0.738876
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10501967 93 + 22224390
GCCGGGGUAACGAGGUCAUUUGGCAAUAUACCAACACAAACAAAAAUUAUGUUAUUGGUCAAUGUAUUUAUGAGUACGCCAGGCUCUGGCCCC
((((((((...(....)..(((((.....(((((....((((.......)))).)))))....(((((....))))))))))))))))))... ( -24.20)
>DroSec_CAF1 33040 93 + 1
GCCGGGGUAACGAGGUCAUUUGGCAAUAUACCAACACAAACAAAAAUUAUGUUAUUGGUCAAUGUAUUUAUGAGUACGCCAGGCUCUGGCCCC
((((((((...(....)..(((((.....(((((....((((.......)))).)))))....(((((....))))))))))))))))))... ( -24.20)
>DroSim_CAF1 33490 93 + 1
GCCGGGGUAACGAGGUCAUUUGGCAAUAUACCAACACAAACAAAAAUUAUGUUAUUGGUCAAUGUAUUUAUGAGUACGCCAGGCUCUGGCCCC
((((((((...(....)..(((((.....(((((....((((.......)))).)))))....(((((....))))))))))))))))))... ( -24.20)
>DroEre_CAF1 34834 93 + 1
GCCGGGGUAACGAGGUCAUUUGGCAAUAUACCAACACAAACAAAAAUUAUGUUAUUGGUCAAUGUAUUUAUGAGUACGCCAGGCUCUGGCCCC
((((((((...(....)..(((((.....(((((....((((.......)))).)))))....(((((....))))))))))))))))))... ( -24.20)
>DroYak_CAF1 36121 93 + 1
ACCGGGGUAACGAGGUCAUUUGGCAAUAUACCAACACAAACAAAAAUUAUGUUAUUGGUCAAUGUAUUUAUGAGUACGCCAGGCUCUGGCCCC
...(((((...(((....((((((.....(((((....((((.......)))).)))))....(((((....))))))))))))))..))))) ( -23.80)
>consensus
GCCGGGGUAACGAGGUCAUUUGGCAAUAUACCAACACAAACAAAAAUUAUGUUAUUGGUCAAUGUAUUUAUGAGUACGCCAGGCUCUGGCCCC
...(((((...(((....((((((.....(((((....((((.......)))).)))))....(((((....))))))))))))))..))))) (-23.80 = -23.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:27 2006