Locus 3942

Sequence ID	X_DroMel_CAF1
Location	10,498,102 – 10,498,195
Length	93
Max. P	0.742528

overview

Window 6

Location	10,498,102 – 10,498,195
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	87.31
Mean single sequence MFE	-17.39
Consensus MFE	-12.02
Energy contribution	-13.90
Covariance contribution	1.88
Combinations/Pair	1.10
Mean z-score	-2.18
Structure conservation index	0.69
SVM decision value	0.45
SVM RNA-class probability	0.742528
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10498102 93 + 22224390
AUAAGAAAGUACUUUAAACUCUUUUAAGAGGCAUAUAGUCUGGAUCAAUAUGCUUAAAACGUACUUCCUGCAAGACUUCAACAAAACAUCAAU
...((.((((((......((((....))))((((((.(.......).)))))).......)))))).))........................ ( -14.90)
>DroSec_CAF1 29204 93 + 1
AUAAGGAAGUACUUUUAACUCUUUUGAGAGGCAUAUAGUCUGGAUCAAUAUGCUUAAAACGUACUUCCUGCAAGACUUCAACAAAACAUCAAU
...(((((((((((((((((((....))))((((((.(.......).)))))))))))).)))))))))........................ ( -23.70)
>DroSim_CAF1 29681 93 + 1
AUAAGGAAGUACUUUCAACUCUUUUAAGAGGCAUAUAGUCUGGAUCAAUAUGCUUAAAACGUACUUCCUGCAAGACUUCAACAAAACAUCAAU
...(((((((((......((((....))))((((((.(.......).)))))).......)))))))))........................ ( -21.70)
>DroEre_CAF1 30852 93 + 1
AUGAGGAAGUACUUUCAACUUAAUUAAGAAGCAAACAGUCUGGAUCCAUAAGCUUAAAACGUACUUCCUGCGAAACUUCAACAAAGCAUCAAU
.(((((((((((......(((....)))((((...................)))).....))))))))(((..............)))))).. ( -15.65)
>DroYak_CAF1 31197 93 + 1
AUUAGAAAGUACUUUCAACUCUAUUAAGAAGCGUAUAUUCUCGAUCCAUAAACAUAAAACGUAUUUACUGCAAAGCUUCGGCAAAACAUCAAU
...((((.((((((((...........)))).)))).)))).(((...............(((.....)))...((....)).....)))... ( -11.00)
>consensus
AUAAGGAAGUACUUUCAACUCUUUUAAGAGGCAUAUAGUCUGGAUCAAUAUGCUUAAAACGUACUUCCUGCAAGACUUCAACAAAACAUCAAU
...(((((((((......((((....))))((((((.(.......).)))))).......)))))))))........................ (-12.02 = -13.90 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:23 2006