Locus 394

Sequence ID X_DroMel_CAF1
Location 1,168,382 – 1,168,502
Length 120
Max. P 0.500000
window597

overview

Window 7

Location 1,168,382 – 1,168,502
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.97
Mean single sequence MFE -28.84
Consensus MFE -22.38
Energy contribution -23.74
Covariance contribution 1.36
Combinations/Pair 1.09
Mean z-score -1.45
Structure conservation index 0.78
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1168382 120 + 22224390
UGCCAAUAAACAUUUUAGGGGGCGCAACCUAAGUGAAUAGGUAAAAGUUUCCUAGUUGACAUCAUCGACCAGGCCACUUGGAUUGCAGAAACCUUUAAUUCGCCAUUAAGUGUGCAAUUA
(((......((((((.....(((((((.(((((((..((((.........))))(((((.....))))).....))))))).)))).(((........))))))...))))))))).... ( -29.60)
>DroSec_CAF1 4370 120 + 1
UGCCAAUAAACAUUUUAGGGGGCGCAACCCAAGUGAAUAGGUAAAAGUUUCCUAGUUGACAUCAUCGGCCAGGCCACUUGGAUUGCAGAAACCUUUAAUUCGCCAUUAAGUGUGCAAUUA
(((......((((((.....(((((((.(((((((..((((.........))))(((((.....))))).....))))))).)))).(((........))))))...))))))))).... ( -31.40)
>DroSim_CAF1 4887 120 + 1
UGCCAAUAAACAUUUUAGGGGGCGCAACCCAAGUGAAUAGGUAAAAGUUUCCUAGUUGACAUCAUCGGCCAGGCCACUUGGAUUGCAGAAACCUUUAAUUCGCCAUUAAGUGUGCAAUUA
(((......((((((.....(((((((.(((((((..((((.........))))(((((.....))))).....))))))).)))).(((........))))))...))))))))).... ( -31.40)
>DroEre_CAF1 3516 115 + 1
UGCCAAUAAACAUUUUAGGGGGCGCAACCCAAGUGAAUAGGUAAAAGUUUUCUAGUUGACAUCAUCGAC-----CACUUGGAUUGCGAAAACCUUUAAUACGCCAUUAAGUGUGCAAUUA
(((...........(((((((.(((((.(((((((..((((.........))))(((((.....)))))-----))))))).)))))....))))))).((((......))))))).... ( -32.20)
>DroYak_CAF1 6332 106 + 1
UGCCAAUAAACAUUUUAGGGGGCGCAACCCAAGUGAAUAGGUAAAAGUUUCCUAGUUGACAUCAUCG--------------AUUGCAAAAACCUUUAAUUCGCAAUUAAGUGUGCAAUUA
(((((.............(((......)))..((((((((((.....(((..(((((((.....)))--------------))))..)))))))...)))))).......)).))).... ( -19.60)
>consensus
UGCCAAUAAACAUUUUAGGGGGCGCAACCCAAGUGAAUAGGUAAAAGUUUCCUAGUUGACAUCAUCGACCAGGCCACUUGGAUUGCAGAAACCUUUAAUUCGCCAUUAAGUGUGCAAUUA
(((((.........(((((((..((((.(((((((..((((.........))))(((((.....))))).....))))))).)))).....)))))))............)).))).... (-22.38 = -23.74 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:25 2006