| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,494,642 – 10,494,758 |
| Length | 116 |
| Max. P | 0.500000 |
| Location | 10,494,642 – 10,494,758 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.10 |
| Mean single sequence MFE | -30.25 |
| Consensus MFE | -16.66 |
| Energy contribution | -17.58 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.55 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10494642 116 - 22224390 UUGGCACUCAUUGCAGUCAGUUUUGCACUGCAGGCGA---AACAGAUGGUGC-CCAAACCUCAUUAUAUCCUCUGGUCAUGUGAAUCUAAUGAAAUCUUAUGACCAAAAAAUGUGUCUAC ..(((((((.((((((((......).)))))))..))---....((.(((..-....)))))...........((((((((.((.((....))..)).))))))))......)))))... ( -29.50) >DroSec_CAF1 25796 109 - 1 UUGGCACUCAUUGCAGCCAGUUUUGCACUGCAGGCGA---AACAGAUGGGGC-CCAAACCUCAUUAUAUCUUCUGGUCAUGUGAAUCUAAUGAAA----AAGGCCAAAAAAUGUGCC--- ..(((((((((....(((((((((((.(....)))))---))).(((((((.-.....)))))))........))))...)))).((....))..----.............)))))--- ( -28.80) >DroSim_CAF1 26321 116 - 1 UUGGCACUCAUUGCAGCCAGUUUUGCACUGCAGGCGA---AACAGAUGGGGC-CCAAACCUCAUUAUAUCUUCUGGUCAUGUGAAUCUAAUGAAAUCUUAUGGCCAAAAAAUGUGCCUAC ..(((((............(((((((.(....)))))---))).(((((((.-.....)))))))........((((((((.((.((....))..)).))))))))......)))))... ( -33.80) >DroEre_CAF1 27431 116 - 1 UUGGCGCUCAUUGCGGGCAGUUUUGCACUGCAGGCAG---AACAGAUGGUGC-CAGAACCUCAUUAUAUCUUCUGGUCAUGUGAAUCUAAUGAAAUCUUAUGACCAAAAAAUGUGUCUAC (((((((.((((((..(((((.....)))))..))).---.....)))))))-)))........(((((.((.((((((((.((.((....))..)).)))))))).)).)))))..... ( -33.40) >DroYak_CAF1 27752 120 - 1 UUGGCGCCCAUUGCAGGCAGCUUUGCACUGCAGGCAAAGAAACAGAUGUUGCCCAAAACAUCAUUAUAUCAUUUGGUCAUGUGAAUCUAAUGAAAUCUUAUGACCAAAAAGUGUGUCUAC .....(((...(((((((......)).))))))))..(((.(((((((((......)))))).........((((((((((.((.((....))..)).))))))))))...))).))).. ( -36.90) >DroAna_CAF1 28666 90 - 1 UUGUG--------------------------GGACGA--GAGCAGAUGGCGC-AC-AACCUCAUUAUAGCUUCUGGUCAUGUGGAUCUAAUGAAAUCUUAUGACCGAAAAAUGUGUCUAC .....--------------------------(((((.--((((.(((((.(.-..-..).)))))...)))).((((((((.((((........)))))))))))).......))))).. ( -19.10) >consensus UUGGCACUCAUUGCAGCCAGUUUUGCACUGCAGGCGA___AACAGAUGGUGC_CCAAACCUCAUUAUAUCUUCUGGUCAUGUGAAUCUAAUGAAAUCUUAUGACCAAAAAAUGUGUCUAC ..(((((...((((((...........))))))........................................((((((((.((.((....))..)).))))))))......)))))... (-16.66 = -17.58 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:19 2006