| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 10,492,498 – 10,492,598 |
| Length | 100 |
| Max. P | 0.795930 |
| Location | 10,492,498 – 10,492,598 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 87.40 |
| Mean single sequence MFE | -24.81 |
| Consensus MFE | -22.20 |
| Energy contribution | -22.40 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.795930 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 10492498 100 + 22224390 GAGUCACACCAUUC---CGGGUAACCUCCUGACACAUUGGCCUUCAAGGCUGACUUUUCUA--CUUGCCCGUCUUGUGGUGACCCCCUGUUCC-------UUCGUUUUUACU ..(((((..((...---(((((((......((....(..(((.....)))..)....))..--.)))))))...))..)))))..........-------............ ( -24.30) >DroSec_CAF1 23743 102 + 1 GAGUCACACCAUUC---CGGGUAACCUCCUGACACAUUGGCCUUCAAGGUUGUCAUUUGUACACUUACCCGUCUUGUGGUGACCCACUGUUCC-------UUCGUUUUUAGU (.(((((..((...---(((((((.....(((((.....(((.....)))))))).........)))))))...))..))))).)........-------............ ( -23.04) >DroSim_CAF1 24217 100 + 1 GAGUCACACCAUUC---CGGGUAACCUCCUGACACAUUGGCCUUCAAGGCUGACUUUUCUA--CUUACCCGUCUUGUGGUGACCCCUUGUUCC-------UUCGUUUUUAGU ..(((((..((...---(((((((......((....(..(((.....)))..)....))..--.)))))))...))..)))))..........-------............ ( -24.30) >DroEre_CAF1 25326 100 + 1 GAGUCACACCAUUC---CGGGUAACCUUCUGACACAUUGGCCUUCAAGGCUGACUUUUCUG--CUUGCCCGUCUUGCGGUGACCCCCUAUACC-------UUCGUUUUUGCU ..(((((..((...---(((((((.(....((....(..(((.....)))..)....)).)--.)))))))...))..)))))..........-------............ ( -26.00) >DroYak_CAF1 25501 110 + 1 GAGUCACACCAUACCGCCGGGUAACCUCCUGACACAUUGGCCUUCAAGGCUGACUUUUCUG--CUUGCCCGUCUUGUGGUGACCCCCUGUACUACGUAUACUACUUUUUACU ((((..(((((((..(.(((((((.(....((....(..(((.....)))..)....)).)--.))))))).).)))))))......(((((...)))))..))))...... ( -26.40) >consensus GAGUCACACCAUUC___CGGGUAACCUCCUGACACAUUGGCCUUCAAGGCUGACUUUUCUA__CUUGCCCGUCUUGUGGUGACCCCCUGUUCC_______UUCGUUUUUACU ......((((((.....(((((((......((....((((((.....))))))....)).....)))))))....))))))............................... (-22.20 = -22.40 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:12:11 2006