Locus 393

Sequence ID X_DroMel_CAF1
Location 1,167,902 – 1,168,021
Length 119
Max. P 0.585158
window596

overview

Window 6

Location 1,167,902 – 1,168,021
Length 119
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 98.88
Mean single sequence MFE -32.60
Consensus MFE -32.60
Energy contribution -32.60
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.69
Structure conservation index 1.00
SVM decision value 0.10
SVM RNA-class probability 0.585158
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1167902 119 + 22224390
ACUCUGACAAAUUGAUAUGCACAUUCGGCGACAUUAGCAUAUGUCGCGUAUGCCUUAAUUAACUAUUCCGCUCAGCUAAUAUCGGUUUCACCCACCCCACAAGGGGCGUUUGGGGCCCU
.............(((((((.......(((((((......)))))))....((...(((.....)))..))...))..)))))(((..((..(.((((....)))).)..))..))).. ( -32.60)
>DroSec_CAF1 3901 119 + 1
ACUCUGACAAAUUGAUAUGCACAUUCGGCGACAUUAGCAUAUGUCGCGUAUGCCUUAAUUAACUAUUCCGCUCAGCUAAUAUCGGUUUCACCCACCCCACAAGGGGCGUUUGGGGCCCU
.............(((((((.......(((((((......)))))))....((...(((.....)))..))...))..)))))(((..((..(.((((....)))).)..))..))).. ( -32.60)
>DroEre_CAF1 2961 117 + 1
AC--UGACAAAUUGAUAUGCACAUUCGGCGACAUUAGCAUAUGUCGCGUAUGCCUUAAUUAACUAUUCCGCUCAGCUAAUAUCGGUUUCACCCACCCCACAAGGGGCGUUUGGGGCCCU
..--.........(((((((.......(((((((......)))))))....((...(((.....)))..))...))..)))))(((..((..(.((((....)))).)..))..))).. ( -32.60)
>DroYak_CAF1 5845 117 + 1
AC--UGACAAAUUGAUAUGCACAUUCGGCGACAUUAGCAUAUGUCGCGUAUGCCUUAAUUAACUAUUCCGCUCAGCUAAUAUCGGUUUCACCCACCCCACAAGGGGCGUUUGGGGCCCU
..--.........(((((((.......(((((((......)))))))....((...(((.....)))..))...))..)))))(((..((..(.((((....)))).)..))..))).. ( -32.60)
>consensus
AC__UGACAAAUUGAUAUGCACAUUCGGCGACAUUAGCAUAUGUCGCGUAUGCCUUAAUUAACUAUUCCGCUCAGCUAAUAUCGGUUUCACCCACCCCACAAGGGGCGUUUGGGGCCCU
.............(((((((.......(((((((......)))))))....((...(((.....)))..))...))..)))))(((..((..(.((((....)))).)..))..))).. (-32.60 = -32.60 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:24 2006