Locus 3924

Sequence ID X_DroMel_CAF1
Location 10,482,375 – 10,482,488
Length 113
Max. P 0.615611
window6445

overview

Window 5

Location 10,482,375 – 10,482,488
Length 113
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 90.56
Mean single sequence MFE -23.90
Consensus MFE -18.42
Energy contribution -19.06
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -1.57
Structure conservation index 0.77
SVM decision value 0.17
SVM RNA-class probability 0.615611
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10482375 113 + 22224390
CAUAUUUCCCUACUUACUGGCUGUAAACCAAAUCGGCUUAGGGAAUGGAAAGGAAAAACUACCCAACCAACUUAAAAGUUGCGUUUAUCCUUCCAGAA-AUUCAGUGACUUCGC
.....(((((((......(((((..........))))))))))))(((((.(((.((((........(((((....))))).)))).))))))))...-.....(((....))) ( -25.00)
>DroSec_CAF1 13143 113 + 1
CAUAUUUUCCUCCGUACUGCCUGUAAACCAAAUCGGCUUAUCGAAUGGAAUGGAAAAACUACCCAACCAACUUAAAAGUUGCGUUUAUCCUUCCAGAA-AUUCAGUGACUUCGC
(((..((((...((....(((.((.......)).)))....))..(((((.(((.((((........(((((....))))).)))).)))))))))))-)....)))....... ( -18.20)
>DroSim_CAF1 13322 113 + 1
CAUAUUUUCCUCCUUACUGCCUGUAAACCAAAUCGGCUUAUCGAAUGGAAUGGAAAAACUACCCAACCAACUUAAAAGUUGCGUUUAUCCUUCCAGAA-AUUCAGUGACUUCGC
.............((((((.(.((((.((.....)).)))).)..(((((.(((.((((........(((((....))))).)))).))))))))...-...))))))...... ( -18.90)
>DroEre_CAF1 14559 110 + 1
CAUAUUUU---UUUCACUGGCUGCAAACCAAAUCGGUUUAGGGCAUGGAA-GGAAAAACUACCCAACCAACUCUAAAGUUGCGUUUAUCCUUCCAGAAAAUUCAGUGACUUCGC
........---..(((((((((..(((((.....)))))..))).(((((-(((.((((........(((((....))))).)))).)))))))).......))))))...... ( -32.10)
>DroYak_CAF1 15251 113 + 1
CAUAUUUUCAUCUUUACUGGCUGUAAACCUAAUCGGCUUAGGGAAUGGAAUGGAAAAACUACCCAACAAGCGCAAAAGUUGCGUUUAUCCUUCCAGAA-AUUCAGUGACUUCGC
.............((((((((((..........))))....((((.(((.(((.........)))..(((((((.....))))))).)))))))....-...))))))...... ( -25.30)
>consensus
CAUAUUUUCCUCCUUACUGGCUGUAAACCAAAUCGGCUUAGGGAAUGGAAUGGAAAAACUACCCAACCAACUUAAAAGUUGCGUUUAUCCUUCCAGAA_AUUCAGUGACUUCGC
.............((((((.((.(((.((.....)).))).))..(((((.(((.((((....((((..........)))).)))).)))))))).......))))))...... (-18.42 = -19.06 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:55 2006