Locus 3923

Sequence ID X_DroMel_CAF1
Location 10,481,776 – 10,481,879
Length 103
Max. P 0.587871
window6444

overview

Window 4

Location 10,481,776 – 10,481,879
Length 103
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 86.48
Mean single sequence MFE -25.77
Consensus MFE -24.66
Energy contribution -25.26
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.32
Structure conservation index 0.96
SVM decision value 0.11
SVM RNA-class probability 0.587871
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 10481776 103 - 22224390
-------CCC-UCCCCUGUAUCCACUAACUUUCAGCAUUUUUAACCCCUCGCCAGGAUCCUUUGUCCUCUUUGCCAGCGCUGUCAUGUGUGACGCGUGGUUAAAAAUUUGA
-------...-....................((((.((((((((((....((.(((((.....)))))....))..((((.((((....)))))))))))))))))))))) ( -24.10)
>DroSec_CAF1 12616 104 - 1
-------CCCGUCCACUGUAUCCACUAACUCUCAGCAUUUUUAACCCCUCGCCAGGAUCCUUUGUCCUGUUUGCCGGCGCUGUCAUGUGUGACGCGUGGUUAAAAAUUUGA
-------........................((((.((((((((((....((((((((.....))))))...))..((((.((((....)))))))))))))))))))))) ( -27.00)
>DroSim_CAF1 12799 104 - 1
-------CCCGUCCACUGUAUCCACUAACUUUCAGCAUUUUCAACCCCUCGCCAGGAUCCUUUGUCCUGUUUGCCGGCGCUGUCAUGUGUGACGCGUGGUUAAAAAUUUGA
-------........................((((.(((((.((((....((((((((.....))))))...))..((((.((((....)))))))))))).))))))))) ( -23.20)
>DroEre_CAF1 13953 110 - 1
UUAAAUGCCC-ACCUCUAGCACCGCCAACUUUCAGCAUUUGUAACCCCUCGCCAGGAUCCUUUGUCCUGUUUGUCGGCGCUGUCAUGUGUGACGCGUGGUUAAAAAUUUGA
.(((((((..-.......((...)).........)))))))(((((...(((((((((.....))))))...((((.(((......)))))))))).)))))......... ( -26.27)
>DroYak_CAF1 14628 99 - 1
------------CCCCUACCAACGUCAACUUUCAGCAUUUUUAACCCUCCGCCAGGAUACUUUGUCCUGUUUGUCGGCGCUGUCAUGUGUGACGCGUGGUUAAAAAUUUGA
------------...................((((.((((((((((...(((((((((.....))))))...((((.(((......)))))))))).)))))))))))))) ( -28.30)
>consensus
_______CCC_UCCACUGUAUCCACUAACUUUCAGCAUUUUUAACCCCUCGCCAGGAUCCUUUGUCCUGUUUGCCGGCGCUGUCAUGUGUGACGCGUGGUUAAAAAUUUGA
...............................((((.((((((((((......((((((.....)))))).......((((.((((....)))))))))))))))))))))) (-24.66 = -25.26 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:11:54 2006